Python scripts used for Akoya Academy Webinar on June 22nd, 2023

To create anaconda environment in Windows, run conda env create -f sscore.yml

To activate and run the jupyter notebook: conda activate sscore, followed by jupyter-notebook --port 8888 and navigate to the notebooks/ folder.

The data files (too large for GitHub) can be downloaded from here.

Other Resources:

1. QuPath: Latest version
2. QuPath StatDist: Extension
3. QuPath StarDist: Model files
4. Scimap: Latest version
5. Automated Phenotyping in R: CELESTA
6. Stiching unmixed tif files from inForm: Groovy script