Make dry run tests more extensive

[Dhananjhay]

This PR addresses issue #42.

[Dhananjhay]

The dry run tests in the CI pipeline have been expanded. Previously, we only ran a basic version of the pipeline using a dummy T1w BIDS dataset. Now, I have added the following tests:

- name: Test T1w modality
- name: Test T2w modality
- name: Test CT modality
- name: Test stereotaxy feature with T1w modality
- name: Test stereotaxy feature with T2w modality
- name: Test fidqc feature

While setting up these tests, I also discovered a minor bug in the execution of the autoafids pipeline for the CT modality. In snakebids.yml, the key name was capitalized as CT, whereas the --modality flag allowed users to pass ct.

Additionally, if we decide to use Conda, the tests will be expanded to include Python versions 3.11 and 3.12.
@ataha24 @mackenziesnyder

[mackenziesnyder]

The dry run tests in the CI pipeline have been expanded. Previously, we only ran a basic version of the pipeline using a dummy T1w BIDS dataset. Now, I have added the following tests:

- name: Test T1w modality
- name: Test T2w modality
- name: Test CT modality
- name: Test stereotaxy feature with T1w modality
- name: Test stereotaxy feature with T2w modality
- name: Test fidqc feature

While setting up these tests, I also discovered a minor bug in the execution of the autoafids pipeline for the CT modality. In snakebids.yml, the key name was capitalized as CT, whereas the --modality flag allowed users to pass ct.

Additionally, if we decide to use Conda, the tests will be expanded to include Python versions 3.11 and 3.12. @ataha24 @mackenziesnyder

Awesome looks good! I will test it out!

[mackenziesnyder]

for the AUTOAFIDS_CACHE_DIR, I think if we combine the dry and wet runs it will be overwritten for the model cache dir in the wet run. Will this be alright or was this section added to cache the setup environment
(dependencies etc.)?

[mackenziesnyder]

I removed this from my code - not longer a conflict!