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MIC 1.2.0

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@agerada agerada released this 12 Nov 11:24
v1.2.0
0fc9626
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Learn about vigilant mode.

  • Functions that download data from PATRIC/BV-BRC have now been updated to
    support changes in BV-BRC ftp.

  • As of this version the genomic functions of the package have been
    deprecated, so that future versions of MIC can focus on MIC analysis.
    Any removed functions will be ported to a new package (called faLearn,
    see: https://github.com/agerada/faLearn) that focuses on machine learning with
    genomic data. The only change for users will be to install and load faLearn.

  • Functionality added to handle <= and => in MIC values, distinguishing them from
    < and >. In general, inhibitory MIC assays report <= and >. The leq and geq
    arguments for force_mic can be used to enforce these. The essential_agreement
    and compare_mic functions now have tolerate_leq and tolerate_geq arguments.
    When all settings are kept at default values, the functions assume typical censoring,
    i.e., <= and >.

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