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0.21.0
Arrange the Milestones map your way. Drag a milestone to another cell on the map's grid (dropping it on a taken cell swaps the two). The layout is saved per project on this computer, never in the repo, and Reset layout brings back the automatic one. From the keyboard: pick a milestone, press M, move with the arrow keys, Enter to drop, Esc to cancel. On touch: press and hold, then drag.
Connect milestones by hand. Drag the dot next to a picked milestone onto another one, or use Add dependency in the panel, to say the second waits on the first. Hand links are drawn as dotted "hand" lines next to the links that come from cards, and can be removed on the map. They change the Now / After flags, the route and "To reach it", and Claude sees them in board_list (and can set them with depends_on in board_add / board_update). They never block starting or finishing a card. A link that would close a loop is refused; a loop made by merging two devices is shown and explained, and removing one link ends it.
The remote (phone) link can see the layout and links but cannot change them. The layout and links carry over when you move the board into the repo, also when an older plugin version does the move.