PyPop 1.4.2

Install via PyPI

pip install -U pypop-genomics

1.4.2 - 2026-08-20

Features

• Update homepage using sphinx-design for nicer layout (#412)
• Remove deprecated datatypes.AlleleCounts class (#373)

Bug Fixes

• safely handle large samples and allele counts in Ewens-Watterson homozygosity calculations (#445)
• cleanup exception handling + update pre-commit hooks (#438)

Internal

• Update numpy requirement from <=2.5.1 to <=2.5.2 in the all-python-deps group (#442)
• Bump cibuildwheel from 4.1.1 to 4.2.0 in the cibuildwheel-deps group (#440)
• cleanup exception handling + update pre-commit hooks (#438)
• Bump actions/setup-python from 6 to 7 in the actions group across 1 directory (#436)
• Bump setuptools-scm from 10.2.0 to 10.2.1 in /website in the all-docs-deps group across 1 directory (#435)
• Bump cibuildwheel from 4.1.0 to 4.1.1 in the cibuildwheel-deps group (#434)
• Bump pydata-sphinx-theme from 0.19.0 to 0.20.0 in /website in the all-docs-deps group (#430)
• Update numpy requirement from <=2.5.0 to <=2.5.1 in the all-python-deps group across 1 directory (#428)
• Bump sphinx-argparse from 0.5.2 to 0.6.0 in /website in the all-docs-deps group (#427)
• Bump actions/cache from 5 to 6 in the actions group across 1 directory (#423)
• Bump setuptools-scm from 10.1.1 to 10.2.0 in the all-python-deps group (#424)
• Bump cibuildwheel from 3.4.1 to 4.1.0 in the cibuildwheel-deps group (#422)
• Bump actions/checkout from 6 to 7 in the actions group across 1 directory (#420)
• Bump setuptools-scm from 10.0.5 to 10.1.1 (#419)
• Update numpy requirement from <=2.4.6 to <=2.5.0 (#418)
• Bump pydata-sphinx-theme from 0.18.0 to 0.19.0 (#416)
• Bump pydata-sphinx-theme from 0.17.1 to 0.18.0 (#411)
• Update lxml requirement from <=6.1.0 to <=6.1.1 (#409)
• Update numpy requirement from <=2.4.4 to <=2.4.6 (#408)
• Bump myst-parser from 5.0.0 to 5.1.0 (#407)
• Bump sphinxcontrib-bibtex from 2.6.5 to 2.7.0 (#405)
• Bump softprops/action-gh-release from 2 to 3 in the actions group across 1 directory (#400)
• Bump pydata-sphinx-theme from 0.17.0 to 0.17.1 (#403)
• Update lxml requirement from <=6.0.4 to <=6.1.0 (#402)
• Update lxml requirement from <=6.0.2 to <=6.0.4 (#399)
• python(CI deps): bump cibuildwheel from 3.4.0 to 3.4.1 in /.github in the build-wheel-deps group across 1 directory (#397)
• Bump pydata-sphinx-theme from 0.16.1 to 0.17.0 (#396)
• Update numpy requirement from <=2.4.3 to <=2.4.4 (#392)
• Bump sphinx-togglebutton from 0.4.4 to 0.4.5 (#393)
• Bump setuptools-scm from 9.2.2 to 10.0.5 (#394)

Documentation

• Bump sphinx-argparse from 0.5.2 to 0.6.0 in /website in the all-docs-deps group (#427)
• Update homepage using sphinx-design for nicer layout (#412)

Committers: @alexlancaster, @dependabot[bot] and @pre-commit-ci[bot]

A history of changes is available in NEWS.md.

Full Changelog: v1.4.1...v1.4.2