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Spl-IsoQuant 2.2

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@andrewprzh andrewprzh released this 06 Feb 21:21
SplIsoQuant-2.2
fefda1a

  • Support for 10x single-cell v3 and 10x Visium 3' data.

  • Universal barcode detection via user-defined molecule structure.

  • --read_group now supports multiple read grouping strategies. You can now simultaneously group counts by samples, BAM tags, barcode and barcode attributes, read attributes provided in separate TSV files or within read ids themselves.

  • New --large_output option to control which large output files are generated.

  • New --barcode2spot option that allows to group counts by barcode attributes, such as cell type or spatial location.

  • Major performance improvements, especially related to Stereo-seq barocode detection.

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