Skip to content

v3.4.0

Latest
Latest

Choose a tag to compare

View all tags
@alirezabk1382927-sys alirezabk1382927-sys released this 30 Jul 03:09
v3.4.0
38eb652
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

🚀 DEG Pipeline & Visualizer — v3.4.0

Multi-Cancer Differential Gene Expression Analysis & Publication-Ready Visualization Suite

Platform
License

📌 About This Release

This release delivers a polished, production-ready build of DEG Pipeline & Visualizer — a desktop application that takes raw TCGA/GDC RNA-seq count data all the way through PyDESeq2-powered differential expression analysis to publication-quality Volcano, MA, Bar Chart, and Heatmap visualizations, entirely through a modern graphical interface.

✨ What's New in v3.4.0

  • 🧬 Refined DEG analysis engine built on PyDESeq2, with improved handling of GDC Sample Sheets and automatic sample-group normalization.
  • 🎨 Redesigned Scientific Dark theme alongside a clean Light theme, both optimized for long analysis sessions.
  • 🌋 Four publication-ready plot types: Volcano Plot, MA Plot, Summary Bar Chart, and Expression Heatmap.
  • 🏷️ Smarter gene labeling with automatic overlap avoidance via adjustText, plus optional labeled/unlabeled output pairs.
  • 🖼️ Live multi-plot preview with thumbnail navigation before committing to export.
  • 📤 Expanded export options — PNG, PDF, TIFF, and SVG at custom DPI, including a combined side-by-side composite figure.
  • ⚡ Background multi-threaded processing to keep the interface responsive during long-running analyses, with a live progress log.
  • 📚 Built-in guided tutorial and one-click citation generator, accessible directly from the About page.
  • 🩺 Broad multi-cancer compatibility — works with any GDC/TCGA project (e.g. TCGA-COAD, TCGA-BRCA, TCGA-LUAD).

💻 Downloads

Cross-platform support is provided for:

Platform Status
🪟 Windows ✅ Supported
🍎 macOS ✅ Supported
🐧 Linux ✅ Supported

Download the build for your operating system from the assets attached to this release below, or run the application from source — see the installation guide in the project README.

📦 Requirements

The complete, verified list of Python dependencies for this release is available in requirements.txt.

📑 How to Cite This Version

Balaei A. (2026). DEG Pipeline & Visualizer (v3.4.0) [Computer software].
https://github.com/alirezabk1382927-sys/DEG-Pipeline-Visualizer

📜 License Notice

Starting with this release, the project is distributed under a custom, restrictive, source-available proprietary license — replacing any previous MIT License. Copying, redistribution, or commercial use without explicit written permission from the Author is strictly prohibited. Full terms are available in LICENSE.

🙏 Acknowledgements

Thank you to everyone using and supporting this project. If it helped your research, please ⭐ star the repository and cite the tool in your publications — it makes a real difference for continued development.

Full Changelog: View all commits

Assets 5
Loading