0.2.0.dev13

What's Changed

• Fix requirement propagation in CWLTranslator by @GlassOfWhiskey in #688
• Refactor private functions by @LanderOtto in #684
• Always wait for DataLocation to be available by @GlassOfWhiskey in #690
• Refactor unit tests by @LanderOtto in #691
• Fix concurrent output retrieval by @LanderOtto in #689
• Improved WorkflowBuilder by @LanderOtto in #692
• Fixed cleanup in unit tests by @LanderOtto in #695
• Fixed invalidate_location method by @LanderOtto in #694
• Improved is_available method of the FileToken class by @LanderOtto in #696
• Added ROLLBACK status by @LanderOtto in #697
• Refactored TransferStep by @LanderOtto in #698
• Added recoverable attribute to the Token object in the FailureManager by @LanderOtto in #699
• Implemented fault tolerance based on Database module by @LanderOtto in #169
• Refactored the no-cycles check for stacked deployment definitions by @LanderOtto in #705
• Improved handling of File literals by @LanderOtto in #693
• Check if bindings exist in the workflow by @LanderOtto in #708
• Removed comparison operators from Hardware class by @LanderOtto in #711
• Fixed CloneTransformer persistence by @LanderOtto in #719
• Fix InitialWorkDirRequirement for nested dirs by @GlassOfWhiskey in #735
• Capture TimeoutError when retrieving disk usage by @GlassOfWhiskey in #737
• Fixed persistence of CWLCommandOutputProcessor classes by @LanderOtto in #740
• Improve JSONSchema specificaton by @GlassOfWhiskey in #745
• Add a check to verify object instantiation in persistence tests by @LanderOtto in #741
• Added llms.txt to StreamFlow documentation by @GlassOfWhiskey in #754
• Fixed preparation of workdir for list and object inputs by @LanderOtto in #732
• Refactor the invocation of FailureManager within the Step by @LanderOtto in #753
• Improved token processing logic in CWLObjectTokenProcessor by @LanderOtto in #758
• Make Scheduler helper methods raise exceptions by @GlassOfWhiskey in #759
• Remove the StreamWrapperContextManager class by @GlassOfWhiskey in #760
• Fixed tag sorting in the GatherStep by @LanderOtto in #761
• Improve StreamFlow type system by @GlassOfWhiskey in #762
• Fixed CWLMapCommandOutputProcessor persistence by @LanderOtto in #765
• Make StreamFlowContext constructor self-contained by @GlassOfWhiskey in #767
• Improved Combinator persistence tests by @LanderOtto in #764
• Fixed CWLCommand persistence by @LanderOtto in #771
• Improved provenance of the task executions by @LanderOtto in #772
• Fixed the transferBufferSize parameter in the FutureConnector by @LanderOtto in #775
• Fixed subworkflows case in the RunCrateProvenanceManager by @LanderOtto in #774
• Remove support for nested Token objects by @GlassOfWhiskey in #777
• Fixed DefaultRetagTransformer within scatter by @LanderOtto in #742

Dependencies

• Bump aiohttp from 3.11.13 to 3.11.14 by @dependabot[bot] in #700
• Bump aiohttp from 3.11.14 to 3.11.16 by @dependabot[bot] in #712
• Bump aiohttp from 3.11.16 to 3.11.18 by @dependabot[bot] in #715
• Bump aiohttp from 3.11.18 to 3.12.2 by @dependabot[bot] in #724
• Bump aiohttp from 3.12.2 to 3.12.6 by @dependabot[bot] in #729
• Bump aiohttp from 3.12.6 to 3.12.8 by @dependabot[bot] in #731
• Bump aiohttp from 3.12.8 to 3.12.9 by @dependabot[bot] in #733
• Bump aiohttp from 3.12.9 to 3.12.12 by @dependabot[bot] in #738
• Bump aiohttp from 3.12.12 to 3.12.13 by @dependabot[bot] in #744
• Bump aiohttp from 3.12.13 to 3.12.14 by @dependabot[bot] in #757
• Bump aiohttp from 3.12.14 to 3.12.15 by @dependabot[bot] in #773
• Bump asyncssh from 2.20.0 to 2.21.0 by @dependabot[bot] in #718
• Bump bcrypt from 4.2.1 to 4.3.0 by @dependabot[bot] in #683
• Bump cachetools from 5.5.2 to 6.0.0 by @dependabot[bot] in #722
• Bump cachetools from 6.0.0 to 6.1.0 by @dependabot[bot] in #746
• Bump cwltool from 3.1.20250110105449 to 3.1.20250715140722 by @dependabot[bot] in #769
• Bump cwl-utils from 0.37 to 0.38 by @dependabot[bot] in #726
• Bump cwl-utils from 0.38 to 0.39 by @dependabot[bot] in #770
• Bump importlib-metadata from 8.6.1 to 8.7.0 by @dependabot[bot] in #716
• Bump jinja2 from 3.1.5 to 3.1.6 by @dependabot[bot] in #687
• Bump jsonschema from 4.23.0 to 4.24.0 by @dependabot[bot] in #723
• Bump jsonschema from 4.24.0 to 4.24.1 by @dependabot[bot] in #766
• Bump jsonschema from 4.24.1 to 4.25.0 by @dependabot[bot] in #768
• Bump kaleido from 0.4.2 to 1.0.0 by @dependabot[bot] in #749
• Bump kubernetes-asyncio from 32.0.0 to 32.3.0 by @dependabot[bot] in #707
• Bump kubernetes-asyncio from 32.3.0 to 32.3.2 by @dependabot[bot] in #717
• Bump pandas from 2.2.3 to 2.3.0 by @dependabot[bot] in #734
• Bump pandas from 2.3.0 to 2.3.1 by @dependabot[bot] in #756
• Bump plotly from 6.0.0 to 6.0.1 by @dependabot[bot] in #702
• Bump plotly from 6.0.1 to 6.1.2 by @dependabot[bot] in #727
• Bump plotly from 6.1.2 to 6.2.0 by @dependabot[bot] in #750
• Bump rdflib from 7.1.3 to 7.1.4 by @dependabot[bot] in #706

Dev Dependencies

• Bump bandit from 1.8.3 to 1.8.5 by @dependabot[bot] in #747
• Bump bandit from 1.8.5 to 1.8.6 by @dependabot[bot] in #755
• Bump cwltest from 2.5.20241122133319 to 2.6.20250314152537 by @dependabot[bot] in #701
• Bump pytest from 8.3.4 to 8.3.5 by @dependabot[bot] in #685
• Bump pytest from 8.3.5 to 8.4.0 by @dependabot[bot] in #730
• Bump pytest from 8.4.0 to 8.4.1 by @dependabot[bot] in #748
• Bump pytest-asyncio from 0.25.3 to 0.26.0 by @dependabot[bot] in #704
• Bump pytest-asyncio from 0.26.0 to 1.0.0 by @dependabot[bot] in #743
• Bump pytest-asyncio from 1.0.0 to 1.1.0 by @dependabot[bot] in #763
• Bump pytest-cov from 6.0.0 to 6.1.0 by @dependabot[bot] in #709
• Bump pytest-cov from 6.1.0 to 6.1.1 by @dependabot[bot] in #713
• Bump pytest-cov from 6.1.1 to 6.2.1 by @dependabot[bot] in #739
• Bump pytest-xdist from 3.6.1 to 3.7.0 by @dependabot[bot] in #725
• Bump pytest-xdist from 3.7.0 to 3.8.0 by @dependabot[bot] in #751
• Bump pyupgrade from 3.19.1 to 3.20.0 by @dependabot[bot] in #721
• Bump sphinx from 8.2.1 to 8.2.3 by @dependabot[bot] in #686
• Bump sphinx-llms-txt from 0.3.0 to 0.3.1 by @dependabot[bot] in #776

Full Changelog: 0.2.0.dev12...0.2.0.dev13