AMICI v0.32.0

Breaking changes

• Removed deprecated amici.petab_* modules (now under amici.petab.*)

  by @dweindl in #2658

• Removed deprecated CLI options to amici_import_petab

  by @dweindl in #2671

Changed requirements

• AMICI now requires a C++20-compatible compiler

  by @dweindl in #2660

• AMICI now requires swig>=4.1

  by @dweindl in #2693

• AMICI now uses the sbmlmath package for sympification of SBML math constructs

  by @dweindl in #2681

Fixes

• Fixed Heaviside functions for <, > <=, >= which could have lead to incorrect simulation results.

  Note that > and >=, as well as < and <= can't be distinguished in some cases (see #2707). Avoid situations where this would matter.

  by @dweindl in #2701

• Prevent segfaults under pytest after swig4.3 wrapping

  by @dweindl in #2696

• Fixed SetuptoolsDeprecationWarning: \project.license` as a TOML table is deprecated`

  by @dweindl in #2697

• Updated Dockerfile, use Ubuntu 24.04 LTS

  by @dweindl in #2698

• SBML import: Handle unsolvable event triggers

  by @dweindl in #2705

• Added RTFUNC_FAIL simulation status

  by @dweindl in #2702

• doc: Enable building docs with Python 3.13

  by @dweindl in #2704

• Fixed crash for models without state variables

  by @dweindl in #2703

• SBML import: avoid repeated xdot==0 checks

  by @dweindl in #2706

• Fixed Boolean to float conversion issues during SBML import

  by @dweindl in #2725

Features

• Support for XOR, == and != operators in SBML models

  Note that not all (combinations of) Boolean functions will work well with AMICI's root-finding. It's recommended to verify the results.

  by @dweindl in #2699, #2708, and #2716

Full Changelog: v0.31.2...v0.32.0