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Fixed
agents connect --llm antigravity now re-synchronizes already-enabled integrations and materializes the workspace MCP file at .agents/mcp_config.json.
agents reset now removes managed files and skill bridges without deleting unrelated files inside tool configuration directories.
Sync preserves malformed existing Gemini and OpenCode configuration files instead of replacing them with a fresh generated file.
Secret overrides in .agents/local.json are now written with owner-only permissions on supported filesystems.
Codex sync now preserves unmanaged project settings and replaces only the agents-managed MCP block, including migration from the legacy fully-generated Codex file.
Antigravity skill sync now recursively discovers nested SKILL.md files and materializes a managed physical flat copy at .gemini/skills, with duplicate-name protection and doctor/status diagnostics.
Legacy Codex migration now preserves user-defined TOML sections after old generated MCP tables.
Antigravity flat bridge updates are staged, dereference source symlinks, and remove stale managed bridges when skill names collide.
Safe reset now removes only agents-managed Gemini and OpenCode fields while preserving user settings and manual MCP entries.
Legacy Codex migration recognizes commented TOML table headers without deleting following user sections.
Invalid existing Codex TOML now skips only Codex materialization so other enabled integrations still synchronize.
Antigravity flat bridge comparison now handles shared symlink targets without permanent sync drift.
agents doctor --fix no longer reports stale Antigravity bridge warnings after synchronization.
Updated Vitest and audited development dependencies to remove known vulnerabilities.