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2.16.3

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@aofarrel aofarrel released this 28 Dec 22:12
· 33 commits to main since this release
2.16.3
15d2ca3
  • Fix CRyPTIC Docker, which for some reason needs the minimap2 index even though the CDC-Varpipe Docker doesn't?
  • Fix fallbacks for new QC metrics
  • Fix a rare bug where a temporary file (seemingly created by Terra?) can be picked up as a read file because of its filename
  • Make decontamination more efficient by providing a not-tarball version of the decontamination reference in the Docker image
    • untar logic is retained as a fallback in case the user selects an older version of the Docker image
  • Decontamination ref is now in /ref/ instead of getting mv'd into the workdir at runtime; this wasn't tested on miniwdl but since it's an abs path this shouldn't be an issue

Full Changelog: 2.16.2...2.16.3

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