0.2.2

Small changes to the WDL. Now outputs the all-important summary, making colors optional, and removing an external wget call.

Full Changelog: 0.2.1...0.2.2

0.2.1

Updates Docker image in the WDL to call SRAnwrp 1.3.0, which is based off a newer version of Ubuntu. Also fixes the backmask number-of-files check.

Full Changelog: 0.2.0...0.2.1

0.2.0

Adds a sample redaction python script with documentation.

Full Changelog: 0.1.0...0.2.0

0.1.0

• All important information can now be written to files instead of just the alignment
• WDL now explictly outputs alignments and noteworthy positions
• WDL will import 0.1.0 of the Python script (instead of main) for reproducibility
• Make highlights less awful for people with dark-background terminals and/or RG-colorblindness
• Make tqdm an optional instead of required dependency
• Add shell script for preconcatenated diff file
• MIT license
• Better test diffs
• Deprecate backmasking

docs

• -h is much prettier now
• More explicit directions
• Add loose benchmark
• Add images of output

Full Changelog: 0.0.9...0.1.0

0.0.9

More granular control of verbosity

0.0.8

Improvements to printing.

• Do not print noteworthy alignments if more than ten diffs
• Only print realignment after backmasking if verbose

0.0.7

Fix backmask task's outputs not being found.

0.0.6

Make a new task for backmasking.

0.0.5

General improvements, output noteworthy alignments.

Full Changelog: 0.0.4...0.0.5

0.0.4

What's Changed

• Improve efficiency, output mask file by @aofarrel in #4

Full Changelog: 0.0.3...0.0.4