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v0.4

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@dcdehaas dcdehaas released this 09 Apr 16:37
· 18 commits to main since this release
d4b5e65

What's Changed

  • Adjust some PCA parameter names by @dcdehaas in #31
  • Fix .shape on some Multi* operators, add options to some CLIs by @dcdehaas in #35
  • Multiple GRG PCA by @dcdehaas in #36
  • More mutation-based filtering from the command line by @dcdehaas in #37
  • CLI improvements, variance() API by @dcdehaas in #38
  • GWAS with covariates: SSE calculation was broken by previous change by @dcdehaas in #39
  • Correct the p-value calculation for GWAS+covariates by @dcdehaas in #40
  • Change mask_samples --> sample_filter by @dcdehaas in #41
  • Use scipy's eigsh instead of eigs - lower memory footprint by @dcdehaas in #42
  • HWE and other per-variant processing methods by @dcdehaas in #44
  • Standardized LinearOperators: sample variance and alpha model by @dcdehaas in #45
  • Support X^TX and XX^T for PCA by @dcdehaas in #46
  • Fix bug where IGD export could fail on regions with no variants by @dcdehaas in #48

Full Changelog: v0.3...v0.4