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v0.4
What's Changed
- Adjust some PCA parameter names by @dcdehaas in #31
- Fix .shape on some Multi* operators, add options to some CLIs by @dcdehaas in #35
- Multiple GRG PCA by @dcdehaas in #36
- More mutation-based filtering from the command line by @dcdehaas in #37
- CLI improvements, variance() API by @dcdehaas in #38
- GWAS with covariates: SSE calculation was broken by previous change by @dcdehaas in #39
- Correct the p-value calculation for GWAS+covariates by @dcdehaas in #40
- Change mask_samples --> sample_filter by @dcdehaas in #41
- Use scipy's eigsh instead of eigs - lower memory footprint by @dcdehaas in #42
- HWE and other per-variant processing methods by @dcdehaas in #44
- Standardized LinearOperators: sample variance and alpha model by @dcdehaas in #45
- Support X^TX and XX^T for PCA by @dcdehaas in #46
- Fix bug where IGD export could fail on regions with no variants by @dcdehaas in #48
Full Changelog: v0.3...v0.4