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Added codegraph_uninit MCP tool (CLI subprocess wrapper around codegraph uninit). Destructive; off by default; enable via CODEGRAPH_MCP_TOOLS=explore,uninit.
New Features
Added codegraph_affected MCP tool (CLI subprocess wrapper around codegraph affected). Off by default; enable via CODEGRAPH_MCP_TOOLS=explore,affected. (#127)
Added codegraph_index MCP tool (CLI subprocess wrapper around codegraph index). Idempotent rebuild; off by default; enable via CODEGRAPH_MCP_TOOLS=explore,index. (#129)