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Thanks for the report, this was a real bug. aube install --force cleared the install state but the linker still treated existing node_modules/.aube entries as up to date, so deleted files were not restored.

Fixed in #1789: --force now re-materializes every linked package (per-project store and global virtual store), so a deleted node_modules/is-number/index.js comes back. With the global virtual store the shared entry is rebuilt and swapped into place.

AI-assisted — Tool: Claude Code; model: anthropic/claude-sonnet-5-5; version: unavailable.

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jdx
Oct 20, 2026 — with coder-jdx
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