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mpwt 0.4

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@ArnaudBelcour ArnaudBelcour released this 25 Feb 15:57
v0.4
ae5915b
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Learn about vigilant mode.

First release on GitHub.

Warning:
In this version mpwt arguments have been changed to make the tool more flexible. Now to launch PathoLogic inference, you need the --patho argument. If you want to create BioPAX/attribute-values file, you need to use --dat and to move only the attribute-values dat files, you must use --md option. More informations in the readme.

Add:

  • mulitprocessing when creating input files, moving result files and deleting PGDBs (issue #1 ).

  • better Pathway-Tools error handling (issue #2 ).

  • more flexible tool (issue #3 ). Change how the argument work to make the tools more flexible.

  • accept GFF file (issue #5 ). Only partial support.

  • an argument to show the PGDBs in ptools-local (--list).

Fix:

  • issue with pop-up (issue #4 ). To avoid all the pop-ups, you need to use at least the version 22.5 of Pathway-Tools.

  • when there is multiple db_xref qualifiers in the 'source' feature of the Genbank file, take the correct one.

  • mpwt stops when there is PGDBs in ptools-local folder.

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