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dock-postprocess v0.1.0

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@averysader averysader released this 05 Sep 23:18
· 7 commits to main since this release

Initial public release of dock-postprocess.

Highlights:

  • Standardized docking-workspace initialization with dock-init
  • Native generalized OpenMM minimization
  • Multichain receptor and ternary-complex support
  • Configurable residue variants and metal restraints
  • Post-minimization pose QC and optional focus-residue analysis
  • Contact enrichment and interaction-landscape analysis
  • Ligand conformational strain analysis
  • Integrated master design table
  • Stable L#### ligand identifiers and generalized results layout

The v0.1.0 workflow was regression-tested against the original validated p53/BRD4 workflow, including exact agreement in starting OpenMM potential energy for the minimizer validation case.

Some downstream analyses still use validated internal compatibility engines behind the generalized public interface.