LogicComm 0.11.0

LogicComm 0.11.0

Faster permutation null + discovery-view ergonomics

• permute_celltype_communication() gains an n_cores argument: the permutation
  loop now runs on forked workers (Unix/macOS) for a near-linear speedup, so a
  publication-grade n_perm (e.g. 200-1000) is affordable. Results are
  reproducible across core counts when seed is set; the serial path
  (n_cores = 1, default) is unchanged. Note: with too few permutations the
  empirical p-value floor is 1 / (n_perm + 1), which caps null_support and
  prevents any Tier 1 -- use enough permutations to resolve p < 0.05.
• permute_celltype_communication() now fails early with a clear message when
  knn_mat is missing for neighborhood mode (previously a cryptic
  .extract_knn error).
• communication_discovery_view() now accepts a LogicCommCellTypeComm object
  directly (it ranks the axes on the fly), in addition to a ranked data.frame
  from rank_communication_axes().