LogicComm 0.13.3

LogicComm 0.13.3

Fixes

• permute_celltype_communication(adaptive = TRUE) now runs the adaptive
  refinement batch in parallel across n_cores, like the preliminary batch.
  Previously the adaptive loop was serial and ignored n_cores, so the bulk of
  the work (e.g. 990 of 1000 permutations) crawled on a single core even with
  n_cores > 1, and the run looked stuck. The parallel path also now reports
  incremental progress in chunks (instead of only a start/done line), and the
  L'Ecuyer-CMRG seed is set once so the preliminary and adaptive batches draw
  different -- but reproducible -- permutations.

Documentation

• Clarified permute_celltype_communication(): with adaptive = TRUE the run
  costs roughly adaptive_n_perm permutations regardless of n_perm (so
  n_perm = 10 with the default adaptive_n_perm = 1000 runs ~1000). For a quick
  test, keep adaptive = FALSE or lower adaptive_n_perm. n_cores now
  documents that it speeds up both batches.