Skip to content

v1.13.0

Choose a tag to compare

View all tags
@github-actions github-actions released this 22 Jun 18:40
v1.13.0
8f47eb0
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

A focused follow-up that makes AnnData obs / var actually dumpable as text.

Added

  • Full obs/var text dump. vv file.h5ad --tab obs --tsv (and --tab var)
    now exports the complete DataFrame instead of the 1000-row interactive
    preview — previously the dump was silently truncated at 1000 rows. -n N
    limits it; the TUI and plain table view keep the bounded preview. The sparse /
    dense X matrix stays capped (a full text dump of X is intentionally not
    enabled).

Fixed

  • High-cardinality categorical obs/var columns now decode to their string
    labels instead of integer codes. The category-dictionary cap was 65536, which
    wrongly showed real columns like CRISPR perturbation guides / targets
    (hundreds of thousands of categories) as raw codes; the default is now
    1,000,000, overridable with VV_CATEGORY_DICT_CAP.
  • Boolean obs/var columns (stored as HDF5 enums — e.g. highly_variable,
    mt) render their values (FALSE / TRUE) instead of ?.
Assets 7
Loading