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antismash.sh
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antismashSH.sh
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circle_test_bgcs.py
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coordinates_reg.py
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counts.py
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download_genomas.py
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extract16S.py
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extractFNA.py
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extractFNA_versaoSH
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extractGBFF.py
extractGBFF.py
 
 
extractGBFF_versaoSH
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extract_afterG4.py
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extract_interg2.py
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extract_upstrem_new.py
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extract_upstremseq.py
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find_streptomyces.sh
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find_streptomyces_refseq.sh
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funcaoprokka.py
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intro.md
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nextflowconfig.nf
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orthoani_gensimilarity.py
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phyml_a.py
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pnextflow.nf
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prodigal.linux
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reguladores_classes.py
reguladores_classes.py
 
 
rodarNEXTFLOW.sh
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run_single_antismash.sh
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🧬 Pattern Detection in Regulatory Elements of Biosynthetic Gene Clusters in Streptomyces Species

🧭 Objective

Conduct a comprehensive study of the regulatory mechanisms of biosynthetic gene clusters (BGCs) in Streptomyces species.

📁 About the Repository

This repository contains scripts, data, and documentation related to the analysis and prediction of regulatory factors involved in the expression of BGCs in Streptomyces.

🛠️ Technologies and Tools Used

  • Python
  • Bash
  • Conda (for environment and bioinformatics tool management)
  • NCBI Dataset
  • Prokka
  • PhyML
  • AntiSMASH

🚀 Instructions (under development)

⚠️ Coming soon: instructions for running the complete pipeline, including prerequisites and input/output examples.

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