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Rename transformed (Update for Measure terminology)#441

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Micki-D wants to merge 53 commits intobat:mainfrom
Micki-D:RenameTransformed
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Rename transformed (Update for Measure terminology)#441
Micki-D wants to merge 53 commits intobat:mainfrom
Micki-D:RenameTransformed

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@Micki-D
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@Micki-D Micki-D commented Jun 3, 2024

Updates the original PR #409 with the new measure terminology.

AG and others added 30 commits June 30, 2023 12:49
Co-Authored-By: Cornelius-G <Cornelius-G@users.noreply.github.com>
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Micki-D commented Jun 3, 2024

So the failing tests are due to errors in the generation of viable MCMC chains.
But I am unsure if this is due to issues with the Measure terminology or due to issues in the original PR #409.
Were there any known issues with the transformed MCMC algorithms @Cornelius-G ? Thanks!

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Micki-D commented Jun 3, 2024

Also, @oschulz is there a convention for when to use 'X_density' or 'X_measure' or 'm' as variable names?
It's unclear to me from the existing code.
Thanks!

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codecov Bot commented Jun 16, 2024

Codecov Report

Attention: Patch coverage is 9.83146% with 642 lines in your changes missing coverage. Please review.

Project coverage is 42.60%. Comparing base (67ac2bf) to head (427481f).
Report is 2 commits behind head on main.

Current head 427481f differs from pull request most recent head 189c285

Please upload reports for the commit 189c285 to get more accurate results.

Files Patch % Lines
src/samplers/transformed_mcmc/mcmc_iterate.jl 0.00% 126 Missing ⚠️
src/samplers/transformed_mcmc/chain_pool_init.jl 0.00% 111 Missing ⚠️
src/samplers/transformed_mcmc/mcmc_convergence.jl 0.00% 56 Missing ⚠️
src/samplers/transformed_mcmc/mcmc_stats.jl 0.00% 56 Missing ⚠️
...sformed_mcmc/mcmc_tuning/mcmc_proposalcov_tuner.jl 0.00% 54 Missing ⚠️
src/samplers/transformed_mcmc/proposaldist.jl 0.00% 43 Missing ⚠️
...rc/samplers/transformed_mcmc/multi_cycle_burnin.jl 0.00% 37 Missing ⚠️
src/samplers/transformed_mcmc/mcmc_algorithm.jl 0.00% 30 Missing ⚠️
...ers/transformed_mcmc/mcmc_tuning/mcmc_ram_tuner.jl 0.00% 30 Missing ⚠️
src/samplers/transformed_mcmc/mcmc_sample.jl 0.00% 29 Missing ⚠️
... and 8 more
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #441      +/-   ##
==========================================
- Coverage   47.26%   42.60%   -4.67%     
==========================================
  Files         111      127      +16     
  Lines        5385     6068     +683     
==========================================
+ Hits         2545     2585      +40     
- Misses       2840     3483     +643     

☔ View full report in Codecov by Sentry.
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@Micki-D Micki-D closed this by deleting the head repository Sep 29, 2025
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4 participants