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Feat/devsu 2830 load flags#107

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elewis2 merged 23 commits into
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feat/DEVSU-2830-load-flags
Apr 20, 2026
Merged

Feat/devsu 2830 load flags#107
elewis2 merged 23 commits into
developfrom
feat/DEVSU-2830-load-flags

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@elewis2 elewis2 commented Mar 17, 2026

Adds functionality to include 'flags' for observed variants (comma-separated string list, for display in the kb summary page in IPR).

Includes ability to pass a csv of transcript flags (eg MANE, APRIS, canonical transcript) as an argument to the report creation function, match these to the transcripts of observed variants, and include the flags for upload.

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codecov-commenter commented Mar 17, 2026

Codecov Report

❌ Patch coverage is 93.84615% with 4 lines in your changes missing coverage. Please review.
✅ Project coverage is 83.46%. Comparing base (3d54876) to head (59f673c).
⚠️ Report is 3 commits behind head on develop.

Files with missing lines Patch % Lines
pori_python/ipr/main.py 77.77% 4 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##           develop     #107      +/-   ##
===========================================
+ Coverage    82.98%   83.46%   +0.48%     
===========================================
  Files           18       18              
  Lines         2480     2546      +66     
===========================================
+ Hits          2058     2125      +67     
+ Misses         422      421       -1     
Flag Coverage Δ
unittests 83.46% <93.84%> (+0.48%) ⬆️

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@elewis2 elewis2 marked this pull request as ready for review March 18, 2026 23:16
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@elewis2 elewis2 requested a review from mathieulemieux April 17, 2026 18:22
@elewis2 elewis2 merged commit 7f597ac into develop Apr 20, 2026
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@mathieulemieux mathieulemieux mentioned this pull request May 20, 2026
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3 participants