drbecavin (13):
Separate search of scanpy, seurat and cellranger. Add atlas_seurat for managing Seurat object with rpy2
Parse Cellranger files by searching for clustering and reductions in outs/analysis/ folder
Implement Seurat management via rpy2. Summary, adata, qc and umap/tsne is now performed with R. No conversion from seurat to scanpy is needed anymore
Add metrics calculation for Seurat objects (dimred not working yet)
Run lint, clean code
Fix requirements
Update README.md
Fix requirements
Fix requirements
Minor bug correction
Merge pull request #26 from becavin-lab/rpy2
Minor bug correction
release: version 0.1.0 🚀