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v0.7.0 — source contrast, Oceania transect, admixture dating

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@bennettek99-spec bennettek99-spec released this 16 Aug 21:43
· 9 commits to main since this release
v0.7.0
b08244b

Highlights

  • Neanderthal source contrast (archaic-pipeline neanderthal-source): Altai-vs-Vindija affinity across 10,954 Eurasian ancients; detection limit 0.0098 in D_VA (13% of signal), now backed by a two-way subsample power analysis showing archaic genomes (sites), not cohort size, bind the SE.
  • Oceania time transect: Remote Oceania Denisovan affinity tracks Papuan-related influx over 3,000 years; Guam/Marianas control stays flat.
  • Admixture dating (archaic-admixture-date): AADR-native Moorjani-style ancestry-covariance decay with Ranis/Zlatý kůň exploratory primary analysis.
  • Repo layout: scripts/docs flatten; upstream phase intermediates untracked; CI checkout@7 / setup-python@7; tomli ≥2.4.1.

Install

pip install git+https://github.com/bennettek99-spec/Archaic-DNA-processing-pipeline.git@v0.7.0

See CHANGELOG.md for the full entry. Zenodo DOI appears after the GitHub→Zenodo archive completes (if the integration is enabled).

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