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version-3.8.0

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@jromejon jromejon released this 27 May 13:44
· 5 commits to devel since this release
version-3.8.0
e0ba41c

version-3.8.0
05/27/2026

NEW FEATURES

  • Nextflow code refactoring using workflows #352
  • Ad-hoc variable to ensure reproducibility set in both assets/Dockerfile.env and assets/def.env #350
  • New cmake options:
    • 'ap_docker_registry_push_repo' and 'ap_docker_registry_push_user' to push docker/podman container on a registry #351
    • 'ap_install_singularity_images_from_registry' to build apptainer sif file using docker/podman container available on a registry #351
    • 'ap_no_git' to deploy without git retrieving informations #366
  • Update (auto-generation) data/cmake-init-default.cmake and documentation accordingly #358
  • almalinux:9.7 set as default for the containers #361
  • conda 26.1.1-3 from miniforge set as default for the containers #361
  • Update apptainer version in conda env #360
  • Remove files not used anymore #356
  • Geniac CLI:
    • Check conda yml format in sections dependencies and pip #368
    • Check conda format in geniac.config #368
    • Python packaging:
      • Merge setup.cfg (setuptools) and pyproject.toml for python packages #364
      • Transfer cmake dependency from setup.cfg to conda env #364
    • Remove all Nextflow options from the geniac.ini file #369
    • Remove the checks in the linter relating to process scope options #369
      BUGFIX
  • Get env name from yml conda file #353
  • Update valid git tag pattern to handle production versions like v12.23.34 #359
  • Remove gitlab-ci-token in the gitUrl label for container recipes (stepGitInfo.cmake) #362
  • Replace pkg_resources (deprecated) by importlib.resources #349

DOCUMENTATION

  • Update readthedocs config files (docs/environment.yml and .readthedocs.yml) #357
  • Update the documentation with a "Contributing" section to detail how to develop geniac #355
  • README file added to explain the content of each folder within the source code repository, inclusion of the README files within the rst file #355
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