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Biotite 0.20.0

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@padix-key padix-key released this 27 Feb 10:54
v0.20.0
a8f7e16
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Learn about vigilant mode.

Changelog

Additions

  • Added structure.from_template() to create a structure.AtomArrayStack from an existing atom array (or stack) and coordinates
  • Added ignore parameter to sequence.io.genbank.get_annotation() to ignore the given feature keys
  • Added sequence.graphics.plot_plasmid_map() for visualizing sequence.Annotation objects as plasmid
  • Added a bunch of new examples to the gallery
  • Added support for Python 3.8 on Windows

Changes

  • The output of the score_matrix() method of sequence.align.SubstitutionMatrix is not writable anymore, rendering a SubstitutionMatrix truly immutable
  • Renamed environment.yaml to environment.yml
  • A sequence.Feature must have at least one location

Fixes

  • Fixed incorrect centroid calculation in structure.superimpose(), when providing a boolean mask
  • Fixed installation of PyPI source distributions
  • Fixed issues when reading text files with \r\n line breaks (line breaks with carriage return, typical for Windows)
Assets 16
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