Biotite 0.24.0

Changelog

Additions

• Added sequence.ProteinSequence.get_molecular_weight() method
• Added application.sra subpackage as interface to NCBI SRA tools
  • FastqDumpApp is used for fetching FASTQ files from the NCBI SRA
• Added iter_read() static method to sequence.io.fasta.FastaFile
  and sequence.io.fasta.FastqFile
  • This method is used to parse header-sequence-pairs from FASTA/FASTQ
    files without the necessity to keep the entire file in memory.
• set_sequence and set_sequences in sequence.io.fasta
  and sequence.io.fasta support writing RNA sequences with the new
  as_rna parameter

Fixes

• Fixed missing whitespace at the end of _loop category labels in
  PDBx/mmCIF files (#224)
• Fixed inconsistent handling of model IDs over different file formats
  for structures where the first model ID is greater than 1 (#227)
• Removed warning in structure.density()
• sequence.io.fastq.get_sequence() and sequence.io.fastq.get_sequences()
  properly handle RNA and ambiguous sequences now
• Fixed start parameter in structure.renumber_atom_ids and
  structure.renumber_res_ids
• Updated fetch URL for FASTA files in database.rcsb.fetch()