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Biotite 0.32.0

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@padix-key padix-key released this 25 Jan 14:36
27acd2d

Changelog

Additions

  • Add Python 3.10 build
  • Add writer_iter() to some File classes
    • Allows entry-wise writing into a file to reduce memory consumption, as
      there is no longer the need to keep the entire file content in memory
    • Implemented for sequence.io.FastaFile, sequence.io.FastqFile and all
      classes inheriting from structure.io.TrajectoryFile
  • Add symbol_spacing parameter to sequence.graphics.plot_alignment
    • If the parameter is given, a small gap is introduced every n
      symbols in the alignment
    • Also added to sequence.graphics.plot_alignment_similarity_based and
      sequence.graphics.plot_alignment_types_based

Changes

  • Python 3.7 builds are discontinued

Fixes

  • Now the simulation time for each frame is returned in
    structure.io.NetCDFFile, previously it was always None