fix(apps): ignore uninstalled preset permissions

[biulight]

Summary

• exclude uninstalled App presets before collecting lifecycle permissions
• prevent unused administrator capabilities and missing declarations from blocking upgrade
• add regression coverage and align English/Chinese command documentation

Verification

• cargo test -p shine-core
• cargo clippy -p shine-core --all-targets -- -D warnings
• cargo fmt --all -- --check
• pnpm check:locales
• pnpm typecheck
• pnpm build
• typos
• git diff --check