meandepth per chromosome

tiwih is distributed as a static linux binary. Just download the binary below, chmod +x and run it directly. It will show a list of subcommands (also documented in the readme).

v0.1.9

• meandepth: add --chromosome(s) argument. This lets us check particular chromosomes and allows a quick sex-check.
  e.g. tiwih meandepth --chromosome chr1,chr2,chrX,chrY $bam will output something like:

chr1    55
chr2    57
chrX    28
chrY    28

which indicates that this sample has one X and one Y chromosome.