Productionizing generate_gene_lof_matrix
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konradjk
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Feb 2, 2021
| defined_sites=hl.agg.count_where(hl.is_defined(mt.GT)), | ||
| ) | ||
| .result() | ||
| ) |
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This looks great! There's a computation of p that I presume is coming in another PR?
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yup! I think you calculated p here https://github.com/macarthur-lab/gnomad_lof/blob/master/constraint/gene_lof_matrix.py#L137. I wasn't sure if I should include that function in this PR
konradjk
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Feb 2, 2021
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from https://github.com/macarthur-lab/gnomad_lof/blob/master/constraint/gene_lof_matrix.py#L83. Also added helper functions, but should I move them to another location?