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Increase server timeout, decrease DataArray batch to 500 (SCP-5429) #331

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Merged
merged 1 commit into from
Nov 28, 2023
Merged

Increase server timeout, decrease DataArray batch to 500 (SCP-5429) #331

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2 changes: 1 addition & 1 deletion ingest/expression_files/expression_files.py
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Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@
class GeneExpression:
__metaclass__ = abc.ABCMeta
COLLECTION_NAME = "genes"
DATA_ARRAY_BATCH_SIZE = 1_000
DATA_ARRAY_BATCH_SIZE = 500
# Logger provides more details
dev_logger = setup_logger(__name__, "log.txt", format="support_configs")

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1 change: 1 addition & 0 deletions ingest/mongo_connection.py
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Expand Up @@ -34,6 +34,7 @@ def __init__(self):
password=self.password,
authSource=self.db_name,
authMechanism="SCRAM-SHA-1",
serverSelectionTimeoutMS=60_000
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@eweitz eweitz Nov 28, 2023

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For reference, we believe the original timeout was 20 seconds.

)
self._client = client[self.db_name]
# Needed to due to lack of database mock library for MongoDB
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