Recycling steps and diffusion samples

[rjrich]

What are the default numbers of recycling steps and diffusion samples when running protenix on one's local machine and on the protenix server? Can these numbers be set on the command line?

[zhangyuxuann]

1. The default numbers of recycling steps is 10, the default numbers of diffusion samples is 5 on both protenix server and local machine.
2. These numbers can not be set on the command line for simplicity. If you want to change the default value, you can install protenix locally by pip install -e . in editable mode. then change it in those lines.
   

   Protenix/runner/batch_inference.py

   Line 167 in 02a5779

   configs_base["model"]["N_cycle"] = 10

   
   I will make these numbers tuneable in the next version.

[rjrich]

Thank you. I think I will wait for the next version rather than changing my current protenix installation.