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epicbutton v0.1.0

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@joncahn joncahn released this 04 Jul 03:06
· 1345 commits to main since this release
v0.1.0
568ea6d

First stable version.
Prepare references, indexes, download fastqs.
ChIP-seq -> call peaks; best peaks (merge+pseudoreps); IDR on replicates; plot mapping stats; plot peak stats; create bigwigs.
next target: Upset plots.
RNA-seq -> call DEGs; plot mapping stats; summary tables pairwise DEGs and unique DEGs; plot expression level; create stranded bigwigs.
next target: GO.
sRNA-seq -> filter structural RNAs; help to create fa with Rfam; call clusters; plot size distributions; create stranded bigwigs per size.
next target: Differential expression with featurecounts
mC -> call DMRs; plot mapping stats; create stranded bigwigs per context.
next target: mC levels on genes
Next target for data-types: TFs to confirm + Motifs; RAMPAGE to confirm + call TSS.
Next target for combined analysis: Heatmaps

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