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Celda Release v1.5.11

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@zhewa zhewa released this 18 Oct 20:48
v1.5.11
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The initial release that passed Bioconductor development build check system without error or warnings. Some notable changes compared to the current stable release version on Bioconductor:

  • Most functions in Celda can now take SingleCellExperiment object as input and output.
  • moduleHeatmap and celdaProbabilityMap functions now use ComplexHeatmap::Heatmap to plot heatmaps.
  • Other usage improvements including addition of new functions (selectFeatures, plotGridSearchPerplexityDiff, splitModule) and documentation updates.

The purpose of switching to SingleCellExperiment object is to incorporate count matrices, variable feature count matrices, Celda results, and column and row annotations into one overarching object. SingleCellExperiment object fits well for this task.

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