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scIntegrationMetrics

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@JGarnica22 JGarnica22 released this 11 Apr 15:32
· 8 commits to master since this release
v1.1.1
d985b2d

Implements a collection of metrics to evaluate scRNA-seq data integration quality, including LISI, per-cell type LISI (CiLISI), and silhouette average width (ASW).
This package is an extension of immunogenomics/LISI; it adds new metrics and can be applied directly on Seurat objects. For a description and motivation for the new metrics refer to Andreatta et al. (2024).

What's Changed

  • fix: standardize ambiguos variable name for cell_type/cluster label in metadata in compute_lisi_splitBy() by @JGarnica22 in #1

Contributors

JGarnica22
Assets 2
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