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@weiglszonja weiglszonja released this 21 Nov 14:06
· 35 commits to main since this release
v1.1.0
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Learn about vigilant mode.

v1.1.0

Fixes

  • Add auditory data to the NWB file as stimulus instead of acquisition. PR #37
  • Removed "conversion", "starting_time" and "rate" key pops from TimeSeries metadata schema when
    constructing the metadata schema for AudioInterface. PR #49
  • Bumped neuroconv version to 0.2.2. PR #52
  • Override get_image_masks from SegmentationExtractor to be faster when the image masks
    for all the ROIs are requested. PR #55

Improvements

  • Create file for tracking changes. PR #36
  • Changed the MotifInterface to take a second argument that corresponds the file
    that contains the Audio and SpikeGLX timestamps. This file is used for synchronizing
    the motif timestamps. PR #33
  • Adjusted session_start_time for ophys to reference the first time entry from imaging timestamps. PR #43
  • Added version pins and utilize minimal dependencies from neuroconv. PR #47
  • Renamed conversion specific files to have generic names. PR #46
  • Updated version pins for requirements. PR #56
  • Changed package version to 1.1.0. PR #57

Features

  • The ScherrerOphysSegmentationInterface is modified to write the configurations
    from EXTRACT segmentation to the NWB File. PR #42
  • Created utility methods for processing the syllables duration and stimulus notes from
    the provided 'Neuropixels_Dataset_Log.xlsx'. The mapping of syllables and motifs is extracted
    from the "motif_syllable_mapping" sheet which contains for each motif the syllable name,
    its duration and the duration of silence after the syllable. The file is added to the repository,
    since it has been corrected for incorrect stimulus dates that did not match the dates in the "session repository"
    sheet. The NWBFile metadata is also updated with a description of the session, and
    the species of the Subject is added to the metadata.yml file. PR #45
  • The MotifInterface is modified to add the timings of syllables along with the motifs.
    The motifs are added to the trials table and is a HierarchicalBehavioralTable where the
    lowest hierarchical level is the level of syllables. PR #34

Testing

  • Added auto-detector workflow for CHANGELOG.md updates. PR #41

Documentation and visualization

  • Added a note about running the conversion scripts when the package was installed from pip. PR #48
  • Added a custom widget that combines the visualisation of the waveform and spectrogram of the sound with the motifs/syllables table.
    The widget also includes the play button for the audio. The tutorial is in happ_ecephys/widgets/notes.md PR #54
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