v0.6.0

Features

• Added FemtonicsImagingExtractor for reading and extracting metadata and imaging data from Femtonics MESc files.PR #440
• Added get_original_frame_indices() method to ScanImageImagingExtractor for mapping extractor samples back to original frame indices in raw microscopy data. This method can be used to synchronize with other data sources or for advanced analysis that requires knowledge of the original frame indices. PR #445

Fixes

• Fixed InscopixSegmentationExtractor with support for string/integer ROI IDs, NWB-compliant pixel masks, standardized ROI lists, improved macOS compatibility, enhanced metadata extraction, and general code cleanup.
  PR #435
• Added missing function to retrieve inscopix metadata PR #436
• Fixed deprecated scipy import warning by updating mat_struct import path PR #442
• Fixed deprecation warning about invalid escape sequence in micromanager TIFF extractor PR #442
• Removed integer-only assumption for ROI IDs in segmentation extractors. ROI IDs can now be strings or any type. Updated generate_dummy_segmentation_extractor to produce string ROI IDs in format roi_00, roi_01, etc. PR #449

Deprecations And Removals

• The get_image_size() method in SegmentationExtractor is deprecated and will be removed on or after January 2026. Use get_frame_shape() instead. PR #443
• The get_num_frames() method in SegmentationExtractor is deprecated and will be removed on or after January 2026. Use get_num_samples() instead. PR #443
• The frame_to_time() method in SegmentationExtractor is deprecated and will be removed on or after January 2026. Use sample_indices_to_time() instead. PR #447
• Removed unused is_writable class attributes from all extractor classes PR #442
• get_frames is now get_samples. get_frames will be deprecated in or after January 2026 PR #444

Improvements

• Bruker series can now read sequences of type BrightnessOverTime PR #448