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v0.7.1

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@cb2e6f cb2e6f released this 07 Mar 13:26
· 15 commits to master since this release
v0.7.1
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0.7.0 -> 0.7.1
o Modularised code for frameshifts and intron phases
o Added support for DNA:DNA alignments at protein level
o Added Coding2Coding and started Genome2Genome model
o Added support for per-transition output with --ryo
o Made changes for compilation on OS-X
o Separated parameters for dna and protein level alignments
o Added dejavu exact repeat finding library (for reprobate)
o Fixed query softmasking and various other bugs
o Added speedups to approximate matching for ipcress
o Updated man pages
o Added transition shields to fix phase model problems
o Separated DP layout code from Optimal module

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