v1.8.0

Changes

• R and Python package dependencies updated to use TileDB-SOMA version 1.5.1

Deprecations

• [python] cellxgene_census.experimental.util.X_sparse_iter is deprecated as of this release and will be removed in a future release. Please use the new SOMA blockwise iterators available on the SparseNDMatrix class.

What's Changed

• [misc] update GHA action and pre-commit versions by @bkmartinjr in #829
• [misc] fix installation of geneformer's transitive dependency in py-dependency-check.yml by @mlin in #833
• [misc] update actions/stale by @bkmartinjr in #834
• [misc] prep for 1.8 release by @bkmartinjr in #852
• [python] update hvg acceptance tests to account for numerical instability by @bkmartinjr in #838
• [builder] Sync whole bucket by @ebezzi in #819
• [builder] Acceptance/Builder tests misc fixes by @ebezzi in #855
• [docs] Update bucket name in AWS Open Data docpage by @ebezzi in #851
• [docs] DOC: Update cellxgene_census_aws_open_data.md typo by @kamilkrukowski in #858
• [r] add r-dependency-check.yml nightly test of current release package by @mlin in #769
• [r] Fix acceptance tests by @pablo-gar in #859

New Contributors

• @kamilkrukowski made their first contribution in #858

Full Changelog: v1.7.0...v1.8.0