This repo collects scripts and files for stemmatology experiments
This jupyter notebook requires collatex and graphviz python packages. (Installation Guides:http://interedition.github.io/collatex/pythonport.html https://www.graphviz.org/download/ )
The scripts reads an input ".xml" file with text transcriptions. It then does the following:
- parse .xml, clean up text and save plaintext into .txt files
- starts a collatex collation and imports each .txt file as a witness.
- outputs the collation results as .csv The .csv can the by transformed into nexus files using https://github.com/jorisvanzundert/cx2tree/tree/main
Nexus files for experiments in PAUP and splitstree
tbd tribes spreadsheet: https://docs.google.com/spreadsheets/d/1b7fyLaNLEgHSAxTDo9vZKiGJNnVajQmd14N3-CaFiEU/edit?usp=sharing