Welcome to the AmphiCap GitHub repository! AmphiCap is a sequence capture probe set for all amphibians, with 28,000 markers that includes AHE markers, BUSCO markers, UCEs, and everything from FrogCap.
Probe set, marker files, and meta data are available here.
Further note, please use the new R package PhyloProcessR and PhyloConfigR for updated data analysis pipelines:
https://github.com/chutter/PhyloProcessR
https://github.com/chutter/PhyloConfigR
For now, the first version of this probe set (FrogCap) can be cited here:
Hutter CR, Cobb KA, Portik DM, Travers SL, Wood Jr PL, Brown RM. (2022) FrogCap: A modular sequence capture probe‐set for phylogenomics and population genetics for all frogs, assessed across multiple phylogenetic scales. Molecular Ecology Resources: 22(3):1100-19.