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@clintval clintval released this 05 Sep 14:12
· 36 commits to main since this release
1.0.0
7129f66
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clintval Clint Valentine
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Bug Fixes

  • Map CCLE numeric sex chromosomes and drop off-contig records (2b12e7c)

Documentation

  • Document usage with a MOLT-4 example (b45a04c)
  • Use --reference in the example and drop the redundant human-only note (1a5a3b1)
  • Simplify README (b37d5b5)
  • Lead installation with the PyPI release (a1fce27)

Features

  • Generate truth-track VCFs for CCLE cell lines (c5db5fc)
  • Suggest close cell-line names when a query does not resolve (7e00c6f)
  • Record the pre-liftover locus in an ORIGINAL_LOCUS INFO field (c394f26)

Miscellaneous Tasks

  • Scaffold cellme from fulcrumgenomics/python-template (6887c93)

Testing

  • Cover builds, cell-line resolution, and VCF construction (4ad8b14)

Ci

  • Harden code-checks workflow permissions and checkout (2e9a163)
  • Add tag-triggered PyPI trusted-publishing workflow (e42381b)
  • Bump pypi-publish to v1.14.2 for Metadata-Version 2.5 support (45c2e19)
  • Pin pypi-publish to the v1.14.2 commit sha, not the tag object (38c3c54)
  • Give git-cliff a token and pull-requests read scope (7129f66)
Assets 4
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