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Bump toil[cwl] from 8.2.0 to 9.0.0 #147

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Merged
merged 2 commits into from
Jul 16, 2025
Merged

Bump toil[cwl] from 8.2.0 to 9.0.0 #147

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99c62ac
Bump toil[cwl] from 8.2.0 to 9.0.0
dependabot[bot] Jul 16, 2025
5d523df
github actions: run apt-get update before installing
mr-c Jul 16, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/ci-tests.yml
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Expand Up @@ -54,7 +54,7 @@ jobs:

- name: Install libcurl-dev for pycurl (needed by arvados)
if: ${{ matrix.step == 'mypy' }}
run: sudo apt-get install -y --no-install-recommends libcurl4-gnutls-dev gnutls-dev
run: sudo apt-get update && sudo apt-get install -y --no-install-recommends libcurl4-gnutls-dev gnutls-dev

- name: Upgrade setuptools and install tox
run: |
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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -40,7 +40,7 @@ Download = "https://github.com/common-workflow-language/cwltool-service/releases
[project.optional-dependencies]
cwltool = ["cwlref-runner"]
arvados = ["arvados-cwl-runner"]
toil = ["toil[cwl]==8.2.0"]
toil = ["toil[cwl]==9.0.0"]

[project.scripts]
wes-server = "wes_service.wes_service_main:main"
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