Skip to content

LDpred2: Testing produced scores against tutorial results#146

Merged
espenhgn merged 8 commits intomainfrom
deepchocolate/tests
Mar 22, 2023
Merged

LDpred2: Testing produced scores against tutorial results#146
espenhgn merged 8 commits intomainfrom
deepchocolate/tests

Conversation

@deepchocolate
Copy link
Contributor

@deepchocolate deepchocolate commented Mar 2, 2023

Fixes #145

Changes proposed in this pull request:

  • Added R unittests of output produces from LDpred2 modes inf and auto. Correlation between polygenic score and phenotyped are expected to be similar to those produced by the LDpred2 tutorial.

Before submitting

  • I've read and followed all steps in the Making a pull request
    section of the CONTRIBUTING docs.
  • I've updated or added any relevant docstrings following the syntax described in the
    Writing docstrings section of the CONTRIBUTING docs.
  • If this PR fixes a bug, I've added a test that will fail without my fix.
  • If this PR adds a new feature, I've added tests that sufficiently cover my new functionality.

@deepchocolate deepchocolate changed the title LDpred2: tests LDpred2: Testing produces scores against tutorial results Mar 2, 2023
@deepchocolate deepchocolate changed the title LDpred2: Testing produces scores against tutorial results LDpred2: Testing produced scores against tutorial results Mar 2, 2023
@deepchocolate deepchocolate marked this pull request as ready for review March 7, 2023 09:05
@deepchocolate deepchocolate requested a review from espenhgn March 7, 2023 09:06
@espenhgn espenhgn merged commit de806ef into main Mar 22, 2023
@espenhgn espenhgn deleted the deepchocolate/tests branch March 22, 2023 09:49
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

LDpred2: More testing

2 participants