Issue 204 #205
Issue 204 #205
Conversation
WalkthroughThis PR reorganizes project structure by moving documentation to appropriate directories, implements a comprehensive YAML-based user preferences and configuration system for Cortex CLI, adds interactive conflict resolution workflows for package installation, enhances CLI with config management commands, removes legacy data files, and updates test imports to use the cortex package namespace. Changes
Sequence Diagram(s)sequenceDiagram
participant User
participant CLI as CortexCLI
participant Resolver as DependencyResolver
participant PrefsUI as Interactive UI
participant PrefsMgr as PreferencesManager
participant FileSystem as YAML Config
User->>CLI: cortex install [packages]
CLI->>Resolver: detect_conflicts()
Resolver-->>CLI: conflicts found?
alt Conflicts Detected
CLI->>PrefsMgr: get saved preference
PrefsMgr->>FileSystem: load preferences.yaml
FileSystem-->>PrefsMgr: preferences
PrefsMgr-->>CLI: saved_resolutions
alt Saved Preference Exists
CLI-->>User: Apply saved resolution
else No Saved Preference
CLI->>PrefsUI: show conflict options
User->>PrefsUI: select keep_new/keep_existing
PrefsUI-->>CLI: user choice
CLI->>PrefsUI: save preference?
User->>PrefsUI: yes
PrefsUI->>PrefsMgr: set(saved_resolutions, ...)
PrefsMgr->>FileSystem: save preferences.yaml
end
end
CLI->>CLI: generate removal commands
CLI->>CLI: execute installation
CLI-->>User: [SUCCESS] Installation complete
sequenceDiagram
participant User
participant CLI as CortexCLI
participant PrefsMgr as PreferencesManager
participant YAML as YAML Config
participant JSON as JSON Export
User->>CLI: cortex config set [key] [value]
CLI->>PrefsMgr: set(key, value)
PrefsMgr->>PrefsMgr: validate value
PrefsMgr->>YAML: update in-memory config
PrefsMgr->>YAML: save(backup=true)
YAML-->>PrefsMgr: config persisted
PrefsMgr-->>CLI: success
CLI-->>User: [SUCCESS] Config updated
User->>CLI: cortex config export [path]
CLI->>PrefsMgr: export_json(path)
PrefsMgr->>JSON: write JSON file
JSON-->>User: JSON config file
User->>CLI: cortex config import [path]
CLI->>PrefsMgr: import_json(path)
PrefsMgr->>JSON: read JSON file
PrefsMgr->>PrefsMgr: validate imported data
PrefsMgr->>YAML: merge and save
YAML-->>PrefsMgr: updated
PrefsMgr-->>CLI: success
CLI-->>User: [SUCCESS] Config imported
Estimated code review effort🎯 4 (Complex) | ⏱️ ~60 minutes
Areas requiring extra attention:
Possibly related PRs
Suggested reviewers
Poem
Pre-merge checks and finishing touches❌ Failed checks (2 warnings, 2 inconclusive)
✅ Passed checks (1 passed)
✨ Finishing touches
🧪 Generate unit tests (beta)
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Pull request overview
This pull request restructures the Cortex Linux project by organizing code into a proper package structure and updating documentation. The changes address Issue #204 by moving modules into a cortex/ package directory and updating all import paths accordingly.
Key Changes
- Reorganized project structure with modules moved to
cortex/package - Updated import paths in all test files from direct imports to
cortex.*imports - Added comprehensive documentation including user guides, developer guides, bounty information, and FAQ
- Added utility scripts for project management and automation
- Updated
.gitignoreto handle data files appropriately - Enhanced contributing guidelines with structure requirements
Reviewed changes
Copilot reviewed 18 out of 60 changed files in this pull request and generated 11 comments.
Show a summary per file
| File | Description |
|---|---|
| test/test_logging_system.py | Updated import path to use cortex.logging_system |
| test/test_llm_router.py | Updated import path and mock patches to use cortex.llm_router |
| test/test_interpreter.py | NEW FILE: Added test for interpreter module (needs import path review) |
| test/test_installation_verifier.py | Updated import path to use cortex.installation_verifier |
| test/test_installation_history.py | Updated import path to use cortex.installation_history |
| test/test_error_parser.py | Updated import path to use cortex.error_parser |
| test/test_context_memory.py | Updated import path to use cortex.context_memory |
| test/test_conflict_ui.py | NEW FILE: Comprehensive test suite for conflict resolution UI |
| test/init.py | NEW FILE: Makes test directory a package |
| scripts/*.sh | NEW FILES: Multiple automation scripts for project management |
| docs/*.md | NEW FILES: Comprehensive documentation including guides, README files, and bounty information |
| data/contributors.json | NEW FILE: Empty contributors tracking file |
| Contributing.md | Updated with structure requirements and typos |
| .gitignore | Updated to ignore data files except contributors.json |
| Developer-Guide.md | REMOVED: Moved to docs/ directory |
| Various data files | REMOVED: CSV/JSON tracking files removed from version control |
Comments suppressed due to low confidence (5)
test/test_context_memory.py:24
- Import of 'Pattern' is not used.
Import of 'Suggestion' is not used.
test/test_error_parser.py:16 - Import of 'ErrorAnalysis' is not used.
test/test_installation_history.py:20 - Import of 'PackageSnapshot' is not used.
Import of 'InstallationRecord' is not used.
test/test_installation_verifier.py:16 - Import of 'VerificationTest' is not used.
test/test_llm_router.py:25 - Import of 'RoutingDecision' is not used.
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| 4. **Claim an issue** (comment "I'll work on this") | ||
| 5. **Submit your PR** | ||
| 6. **Get paid** (bounties on merge) | ||
| 5. **Check `develeoper-guide.md`** (in `docs` directory) for structure and guide |
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Typo in the word "developer". Should be "developer-guide.md" instead of "develeoper-guide.md".
| 5. **Check `develeoper-guide.md`** (in `docs` directory) for structure and guide | |
| 5. **Check `developer-guide.md`** (in `docs` directory) for structure and guide |
| - [ ] Tests pass | ||
| - [ ] Documentation updated | ||
| - [ ] No merge conflicts | ||
| - [ ] maintained file structure |
There was a problem hiding this comment.
Typo: "maintained" should be "maintaining" to match the tense of other items in the checklist.
| - [ ] maintained file structure | |
| - [ ] maintaining file structure |
| - ✅ Documentation with examples | ||
| - ✅ Integration with existing code | ||
| - ✅ Passes all CI checks | ||
| - ✅ Proper file managment and maintaing structure |
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Typo: "managment and maintaing" should be "management and maintaining".
| - ✅ Proper file managment and maintaing structure | |
| - ✅ Proper file management and maintaining structure |
|
|
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| # Should exit on choice 3 | ||
| with self.assertRaises(SystemExit): | ||
| result = self.cli._resolve_conflicts_interactive(conflicts) |
There was a problem hiding this comment.
Variable result is not used.
|
|
||
| # Should exit on choice 3 | ||
| with self.assertRaises(SystemExit): | ||
| result = self.cli._resolve_conflicts_interactive(conflicts) |
There was a problem hiding this comment.
Variable result is not used.
| import unittest | ||
| import sys | ||
| import os | ||
| from unittest.mock import patch, MagicMock, call |
There was a problem hiding this comment.
Import of 'call' is not used.
| from pathlib import Path | ||
| import tempfile | ||
| import shutil | ||
| import json |
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Import of 'json' is not used.
| sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..')) | ||
|
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||
| from cortex.cli import CortexCLI | ||
| from cortex.user_preferences import PreferencesManager, ConflictSettings |
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Import of 'ConflictSettings' is not used.
| except Exception: | ||
| pass |
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'except' clause does nothing but pass and there is no explanatory comment.
| except Exception: | |
| pass | |
| except Exception as e: | |
| self._print_error(f"Failed to load user preferences: {e}") |
| if not any(f"remove {pkg_to_remove}" in cmd for cmd in commands): | ||
| commands.insert(0, f"sudo apt-get remove -y {pkg_to_remove}") | ||
| self._print_status("[INFO]", f"Added command to remove conflicting package: {pkg_to_remove}") | ||
| except Exception: |
There was a problem hiding this comment.
'except' clause does nothing but pass and there is no explanatory comment.
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Actionable comments posted: 7
🧹 Nitpick comments (7)
docs/Developer-Guide.md (1)
94-94: Optional: Consider simplifying "CLI Interface" to avoid redundancy.The phrase "CLI Interface" is technically redundant since "CLI" stands for "Command-Line Interface." Consider using either "CLI" or "Command-Line Interface" alone.
Apply this diff:
-**CLI Interface (`cortex/cli.py`)** +**CLI (`cortex/cli.py`)**Based on static analysis hints.
test/test_installation_history.py (1)
9-14: Consider using a proper test configuration instead of sys.path manipulation.While this pattern works, it can be fragile and doesn't scale well. Consider using
pytestwith aconftest.pyor installing the package in development mode (pip install -e .) to avoid manual path manipulation across all test files.If you want to keep this approach, consider centralizing it in a
conftest.py:# test/conftest.py import sys import os sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))Then individual test files won't need this boilerplate.
test/test_conflict_ui.py (2)
60-68: Remove unused variable assignment to satisfy linter.The
resultvariable is assigned but never used sinceSystemExitis expected.# Should exit on choice 3 with self.assertRaises(SystemExit): - result = self.cli._resolve_conflicts_interactive(conflicts) + self.cli._resolve_conflicts_interactive(conflicts)
362-364: Remove unused variable assignment (same pattern as above).# Should exit on choice 3 with self.assertRaises(SystemExit): - result = self.cli._resolve_conflicts_interactive(conflicts) + self.cli._resolve_conflicts_interactive(conflicts)cortex/user_preferences.py (3)
122-141:from_dictsilently ignores unknown keys in configuration.If a config file contains typos or outdated keys, they will be silently ignored. Consider logging a warning for unknown keys to help users identify configuration issues.
@classmethod def from_dict(cls, data: Dict[str, Any]) -> 'UserPreferences': """Create UserPreferences from dictionary""" + known_keys = {'verbosity', 'confirmations', 'auto_update', 'ai', + 'packages', 'conflicts', 'theme', 'language', 'timezone'} + unknown_keys = set(data.keys()) - known_keys + if unknown_keys: + import logging + logging.warning(f"Unknown preference keys will be ignored: {unknown_keys}") + confirmations = ConfirmationSettings(**data.get("confirmations", {}))
403-405: Hardcoded model list may become stale.The
valid_modelslist is hardcoded and will require code changes when new models are released.Consider making this a class constant or configuration value that can be updated more easily:
+ # At class level in PreferencesManager + VALID_AI_MODELS = ["claude-sonnet-4", "gpt-4", "gpt-4-turbo", "claude-3-opus"] + def validate(self) -> List[str]: ... - valid_models = ["claude-sonnet-4", "gpt-4", "gpt-4-turbo", "claude-3-opus"] - if self._preferences.ai.model not in valid_models: + if self._preferences.ai.model not in self.VALID_AI_MODELS: errors.append(f"Unknown AI model: {self._preferences.ai.model}")Alternatively, consider making validation a warning rather than an error for the model field to allow new models without code changes.
283-354: Theset()method has high cognitive complexity.SonarCloud reports complexity of 42 vs allowed 15. Consider refactoring into smaller handler methods per preference domain.
Example approach using a handler dispatch pattern:
def set(self, key: str, value: Any) -> bool: if self._preferences is None: self.load() parts = key.split(".") handlers = { "verbosity": self._set_verbosity, "confirmations": self._set_confirmations, "auto_update": self._set_auto_update, "ai": self._set_ai, "packages": self._set_packages, "conflicts": self._set_conflicts, } handler = handlers.get(parts[0]) if handler: return handler(parts, value) elif parts[0] in ["theme", "language", "timezone"]: setattr(self._preferences, parts[0], value) return True else: raise ValueError(f"Unknown preference key: {key}")
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⛔ Files ignored due to path filters (1)
bounties_owed.csvis excluded by!**/*.csv
📒 Files selected for processing (18)
.gitignore(1 hunks)Contributing.md(3 hunks)Developer-Guide.md(0 hunks)bounties_pending.json(0 hunks)cortex/cli.py(13 hunks)cortex/user_preferences.py(1 hunks)docs/Developer-Guide.md(1 hunks)issue_status.json(0 hunks)payments_history.json(0 hunks)pr_status.json(0 hunks)test/__init__.py(1 hunks)test/test_conflict_ui.py(1 hunks)test/test_context_memory.py(1 hunks)test/test_error_parser.py(1 hunks)test/test_installation_history.py(1 hunks)test/test_installation_verifier.py(1 hunks)test/test_llm_router.py(10 hunks)test/test_logging_system.py(1 hunks)
💤 Files with no reviewable changes (5)
- bounties_pending.json
- issue_status.json
- payments_history.json
- Developer-Guide.md
- pr_status.json
🧰 Additional context used
🧬 Code graph analysis (4)
cortex/cli.py (3)
cortex/installation_history.py (1)
InstallationHistory(68-653)cortex/user_preferences.py (10)
PreferencesManager(144-488)load(200-225)get(258-281)save(227-256)list_all(478-488)get_config_info(458-476)reset(356-383)validate(385-416)export_json(418-434)import_json(436-456)cortex/dependency_resolver.py (2)
DependencyResolver(39-399)resolve_dependencies(215-280)
test/test_logging_system.py (1)
cortex/logging_system.py (2)
CortexLogger(90-453)LogContext(456-475)
cortex/user_preferences.py (1)
cortex/logging_system.py (1)
info(211-213)
test/test_conflict_ui.py (3)
cortex/cli.py (3)
_resolve_conflicts_interactive(73-123)_ask_save_preference(125-141)config(369-482)cortex/user_preferences.py (9)
PreferencesManager(144-488)ConflictSettings(86-92)get(258-281)save(227-256)load(200-225)reset(356-383)validate(385-416)export_json(418-434)import_json(436-456)cortex/dependency_resolver.py (2)
DependencyResolver(39-399)resolve_dependencies(215-280)
🪛 GitHub Check: SonarCloud Code Analysis
cortex/user_preferences.py
[failure] 283-283: Refactor this function to reduce its Cognitive Complexity from 42 to the 15 allowed.
🪛 LanguageTool
docs/Developer-Guide.md
[style] ~94-~94: This phrase is redundant (‘I’ stands for ‘Interface’). Use simply “CLIInterface”.
Context: ...ns patterns) ``` ### Key Components CLI Interface (cortex/cli.py) - Command-line inte...
(ACRONYM_TAUTOLOGY)
🪛 markdownlint-cli2 (0.18.1)
Contributing.md
76-76: Fenced code blocks should have a language specified
(MD040, fenced-code-language)
🪛 Ruff (0.14.5)
cortex/cli.py
37-38: try-except-pass detected, consider logging the exception
(S110)
37-37: Do not catch blind exception: Exception
(BLE001)
188-189: try-except-pass detected, consider logging the exception
(S110)
188-188: Do not catch blind exception: Exception
(BLE001)
480-480: Do not catch blind exception: Exception
(BLE001)
481-481: Use explicit conversion flag
Replace with conversion flag
(RUF010)
cortex/user_preferences.py
1-1: Shebang is present but file is not executable
(EXE001)
196-196: Consider moving this statement to an else block
(TRY300)
197-197: Do not catch blind exception: Exception
(BLE001)
198-198: Within an except clause, raise exceptions with raise ... from err or raise ... from None to distinguish them from errors in exception handling
(B904)
198-198: Avoid specifying long messages outside the exception class
(TRY003)
198-198: Use explicit conversion flag
Replace with conversion flag
(RUF010)
220-220: Consider moving this statement to an else block
(TRY300)
223-223: Within an except clause, raise exceptions with raise ... from err or raise ... from None to distinguish them from errors in exception handling
(B904)
223-223: Avoid specifying long messages outside the exception class
(TRY003)
223-223: Use explicit conversion flag
Replace with conversion flag
(RUF010)
224-224: Do not catch blind exception: Exception
(BLE001)
225-225: Within an except clause, raise exceptions with raise ... from err or raise ... from None to distinguish them from errors in exception handling
(B904)
225-225: Avoid specifying long messages outside the exception class
(TRY003)
225-225: Use explicit conversion flag
Replace with conversion flag
(RUF010)
238-238: Avoid specifying long messages outside the exception class
(TRY003)
253-253: Consider moving this statement to an else block
(TRY300)
255-255: Do not catch blind exception: Exception
(BLE001)
256-256: Within an except clause, raise exceptions with raise ... from err or raise ... from None to distinguish them from errors in exception handling
(B904)
256-256: Avoid specifying long messages outside the exception class
(TRY003)
256-256: Use explicit conversion flag
Replace with conversion flag
(RUF010)
302-302: Abstract raise to an inner function
(TRY301)
302-302: Avoid specifying long messages outside the exception class
(TRY003)
307-307: Abstract raise to an inner function
(TRY301)
307-307: Avoid specifying long messages outside the exception class
(TRY003)
309-309: Abstract raise to an inner function
(TRY301)
309-309: Avoid specifying long messages outside the exception class
(TRY003)
314-314: Abstract raise to an inner function
(TRY301)
314-314: Avoid specifying long messages outside the exception class
(TRY003)
316-316: Abstract raise to an inner function
(TRY301)
316-316: Avoid specifying long messages outside the exception class
(TRY003)
318-318: Abstract raise to an inner function
(TRY301)
318-318: Avoid specifying long messages outside the exception class
(TRY003)
323-323: Abstract raise to an inner function
(TRY301)
323-323: Avoid specifying long messages outside the exception class
(TRY003)
326-326: Abstract raise to an inner function
(TRY301)
326-326: Avoid specifying long messages outside the exception class
(TRY003)
328-328: Abstract raise to an inner function
(TRY301)
328-328: Avoid specifying long messages outside the exception class
(TRY003)
333-333: Abstract raise to an inner function
(TRY301)
333-333: Avoid specifying long messages outside the exception class
(TRY003)
335-335: Abstract raise to an inner function
(TRY301)
335-335: Avoid specifying long messages outside the exception class
(TRY003)
340-340: Abstract raise to an inner function
(TRY301)
340-340: Avoid specifying long messages outside the exception class
(TRY003)
342-342: Abstract raise to an inner function
(TRY301)
342-342: Avoid specifying long messages outside the exception class
(TRY003)
349-349: Abstract raise to an inner function
(TRY301)
349-349: Avoid specifying long messages outside the exception class
(TRY003)
351-351: Consider moving this statement to an else block
(TRY300)
354-354: Within an except clause, raise exceptions with raise ... from err or raise ... from None to distinguish them from errors in exception handling
(B904)
354-354: Avoid specifying long messages outside the exception class
(TRY003)
354-354: Use explicit conversion flag
Replace with conversion flag
(RUF010)
379-379: Avoid specifying long messages outside the exception class
(TRY003)
453-453: Avoid specifying long messages outside the exception class
(TRY003)
test/test_conflict_ui.py
62-62: Local variable result is assigned to but never used
Remove assignment to unused variable result
(F841)
270-270: Unused method argument: mock_stdout
(ARG002)
284-284: Unused method argument: mock_stdout
(ARG002)
284-284: Unused method argument: mock_input
(ARG002)
364-364: Local variable result is assigned to but never used
Remove assignment to unused variable result
(F841)
🔇 Additional comments (16)
.gitignore (1)
154-160: LGTM!The Cortex-specific ignore rules are well structured. The negation pattern correctly excludes
data/contributors.jsonfrom being ignored while filtering other JSON and CSV files in the data directory.test/__init__.py (1)
1-1: LGTM!The test package initializer is appropriate for establishing the test namespace. This enables proper import resolution for test modules.
test/test_logging_system.py (1)
11-12: LGTM!The import path update correctly references the cortex package namespace, aligning with the project restructuring. The sys.path manipulation properly enables module resolution.
test/test_context_memory.py (1)
17-24: LGTM!The import path update correctly migrates to the cortex package namespace, maintaining all required exports (ContextMemory, MemoryEntry, Pattern, Suggestion). This aligns with the broader repository restructuring.
test/test_installation_verifier.py (1)
7-16: LGTM!The import path updates are consistent with the project-wide restructuring. The sys.path manipulation and cortex.installation_verifier import correctly enable module resolution under the new package structure.
test/test_error_parser.py (1)
7-16: LGTM!The import updates follow the established pattern across the test suite, correctly referencing cortex.error_parser with proper path resolution.
test/test_llm_router.py (2)
16-25: LGTM!The import path updates correctly migrate to the cortex.llm_router namespace, maintaining all required exports. The sys.path manipulation properly enables module resolution.
247-247: Critical patch target updates are correct.All
@patchdecorator targets have been correctly updated to referencecortex.llm_router.*instead ofllm_router.*. This is essential for the mocking to work properly with the new package structure.Also applies to: 279-279, 316-316, 351-351, 383-383, 425-426, 460-461, 502-502, 522-522
docs/Developer-Guide.md (1)
1-184: Excellent developer documentation.The guide comprehensively documents the restructured project layout, development workflow, architecture, and contribution process. This will be valuable for new contributors understanding the codebase organization.
test/test_conflict_ui.py (2)
269-280: Unusedmock_stdoutparameter is acceptable here.The
@patch('sys.stdout')decorator is required to suppress output during test execution, even though the captured output isn't explicitly inspected. The Ruff ARG002 warning can be safely ignored in this context.
32-48: Good test fixture setup with proper cleanup.The use of
tempfile.mkdtemp()andshutil.rmtree()ensures test isolation and proper resource cleanup.cortex/cli.py (3)
73-123: Conflict resolution logic looks correct and user-friendly.The interactive flow with saved preferences lookup, clear menu options, and the option to persist choices is well-designed. The
min:maxkey format ensures consistent conflict identification regardless of input order.
176-176: Package name extraction may be too simplistic.Using
software.split()[0]to get the target package may not work correctly for quoted or multi-word package names like"python 3.11 with pip".Consider extracting the actual package name more robustly, or document that the first word is used as the primary package for conflict detection.
369-482: Config method implementation is comprehensive.The method properly handles all documented actions (list, get, set, reset, validate, info, export, import) with appropriate error handling and user feedback.
cortex/user_preferences.py (2)
36-93: Well-structured dataclasses for preferences.The use of nested dataclasses with
to_dict()methods provides clean serialization. The default values are sensible.
180-198: Backup creation before save is a good safety feature.The timestamped backup approach ensures users can recover from bad configuration changes.
| 4. **Claim an issue** (comment "I'll work on this") | ||
| 5. **Submit your PR** | ||
| 6. **Get paid** (bounties on merge) | ||
| 5. **Check `develeoper-guide.md`** (in `docs` directory) for structure and guide |
There was a problem hiding this comment.
Typo: "develeoper-guide.md" should be "developer-guide.md".
-5. **Check `develeoper-guide.md`** (in `docs` directory) for structure and guide
+5. **Check `developer-guide.md`** (in `docs` directory) for structure and guide📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| 5. **Check `develeoper-guide.md`** (in `docs` directory) for structure and guide | |
| 5. **Check `developer-guide.md`** (in `docs` directory) for structure and guide |
🤖 Prompt for AI Agents
In Contributing.md around line 13, there is a typo in the filename reference:
"develeoper-guide.md" should be corrected to "developer-guide.md"; update the
text to the correct filename and ensure any links or references to that file
elsewhere in the document use the corrected spelling.
| - ✅ Documentation with examples | ||
| - ✅ Integration with existing code | ||
| - ✅ Passes all CI checks | ||
| - ✅ Proper file managment and maintaing structure |
There was a problem hiding this comment.
Typos: "managment" → "management", "maintaing" → "maintaining".
-- ✅ Proper file managment and maintaing structure
++ ✅ Proper file management and maintaining structure📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| - ✅ Proper file managment and maintaing structure | |
| - ✅ Proper file management and maintaining structure |
🤖 Prompt for AI Agents
In Contributing.md around line 59, there are two typos: replace "managment" with
"management" and "maintaing" with "maintaining" so the line reads "✅ Proper file
management and maintaining structure"; update the file accordingly and run a
quick spellcheck to catch any other similar typos.
| - [ ] Tests pass | ||
| - [ ] Documentation updated | ||
| - [ ] No merge conflicts | ||
| - [ ] maintained file structure |
There was a problem hiding this comment.
Typo: "maintained" should be capitalized consistently with other checklist items.
-- [ ] maintained file structure
++ [ ] Maintained file structure🧰 Tools
🪛 markdownlint-cli2 (0.18.1)
76-76: Fenced code blocks should have a language specified
(MD040, fenced-code-language)
🤖 Prompt for AI Agents
In Contributing.md around line 76, the checklist item "- [ ] maintained file
structure" uses a lowercase "maintained" which is inconsistent with other
checklist items; update that line to capitalize the word (e.g., "- [ ]
Maintained file structure") so it matches the capitalization style used
throughout the checklist.
| try: | ||
| self.prefs_manager.load() | ||
| except Exception: | ||
| pass |
There was a problem hiding this comment.
Silent exception swallowing hides initialization failures.
Catching all exceptions and passing silently makes debugging difficult. Consider logging the error or at minimum, handling specific expected exceptions.
self.prefs_manager = PreferencesManager()
try:
self.prefs_manager.load()
- except Exception:
- pass
+ except (IOError, ValueError) as e:
+ # Preferences will use defaults; log for debugging
+ import logging
+ logging.debug(f"Failed to load preferences, using defaults: {e}")📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| try: | |
| self.prefs_manager.load() | |
| except Exception: | |
| pass | |
| self.prefs_manager = PreferencesManager() | |
| try: | |
| self.prefs_manager.load() | |
| except (IOError, ValueError) as e: | |
| # Preferences will use defaults; log for debugging | |
| import logging | |
| logging.debug(f"Failed to load preferences, using defaults: {e}") |
🧰 Tools
🪛 Ruff (0.14.5)
37-38: try-except-pass detected, consider logging the exception
(S110)
37-37: Do not catch blind exception: Exception
(BLE001)
🤖 Prompt for AI Agents
In cortex/cli.py around lines 35 to 38 the code swallows all exceptions when
loading preferences which hides initialization failures; replace the bare except
with targeted handling and logging: catch expected exceptions (e.g.,
FileNotFoundError, JSONDecodeError) and handle them appropriately, and for
unexpected errors catch Exception as e and call the module logger to log the
exception (logger.exception or logger.error with the exception) instead of
passing silently; optionally re-raise or surface fatal errors after logging if
initialization cannot continue.
| # Check for package conflicts using DependencyResolver | ||
| from cortex.dependency_resolver import DependencyResolver | ||
| resolver = DependencyResolver() | ||
|
|
||
| target_package = software.split()[0] | ||
|
|
||
| try: | ||
| graph = resolver.resolve_dependencies(target_package) | ||
| if graph.conflicts: | ||
| resolutions = self._resolve_conflicts_interactive(graph.conflicts) | ||
|
|
||
| if resolutions['remove']: | ||
| for pkg_to_remove in resolutions['remove']: | ||
| if not any(f"remove {pkg_to_remove}" in cmd for cmd in commands): | ||
| commands.insert(0, f"sudo apt-get remove -y {pkg_to_remove}") | ||
| self._print_status("[INFO]", f"Added command to remove conflicting package: {pkg_to_remove}") | ||
| except Exception: | ||
| pass |
There was a problem hiding this comment.
Silent exception handling masks dependency resolution failures.
When dependency resolution fails, users won't know why conflicts weren't detected. At minimum, log the failure in debug mode.
try:
graph = resolver.resolve_dependencies(target_package)
if graph.conflicts:
resolutions = self._resolve_conflicts_interactive(graph.conflicts)
if resolutions['remove']:
for pkg_to_remove in resolutions['remove']:
if not any(f"remove {pkg_to_remove}" in cmd for cmd in commands):
commands.insert(0, f"sudo apt-get remove -y {pkg_to_remove}")
self._print_status("[INFO]", f"Added command to remove conflicting package: {pkg_to_remove}")
- except Exception:
- pass
+ except Exception as e:
+ # Dependency resolution is best-effort; continue without conflict detection
+ self._print_status("[INFO]", f"Could not check for conflicts: {e}")📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| # Check for package conflicts using DependencyResolver | |
| from cortex.dependency_resolver import DependencyResolver | |
| resolver = DependencyResolver() | |
| target_package = software.split()[0] | |
| try: | |
| graph = resolver.resolve_dependencies(target_package) | |
| if graph.conflicts: | |
| resolutions = self._resolve_conflicts_interactive(graph.conflicts) | |
| if resolutions['remove']: | |
| for pkg_to_remove in resolutions['remove']: | |
| if not any(f"remove {pkg_to_remove}" in cmd for cmd in commands): | |
| commands.insert(0, f"sudo apt-get remove -y {pkg_to_remove}") | |
| self._print_status("[INFO]", f"Added command to remove conflicting package: {pkg_to_remove}") | |
| except Exception: | |
| pass | |
| # Check for package conflicts using DependencyResolver | |
| from cortex.dependency_resolver import DependencyResolver | |
| resolver = DependencyResolver() | |
| target_package = software.split()[0] | |
| try: | |
| graph = resolver.resolve_dependencies(target_package) | |
| if graph.conflicts: | |
| resolutions = self._resolve_conflicts_interactive(graph.conflicts) | |
| if resolutions['remove']: | |
| for pkg_to_remove in resolutions['remove']: | |
| if not any(f"remove {pkg_to_remove}" in cmd for cmd in commands): | |
| commands.insert(0, f"sudo apt-get remove -y {pkg_to_remove}") | |
| self._print_status("[INFO]", f"Added command to remove conflicting package: {pkg_to_remove}") | |
| except Exception as e: | |
| # Dependency resolution is best-effort; continue without conflict detection | |
| self._print_status("[INFO]", f"Could not check for conflicts: {e}") |
🧰 Tools
🪛 Ruff (0.14.5)
188-189: try-except-pass detected, consider logging the exception
(S110)
188-188: Do not catch blind exception: Exception
(BLE001)
🤖 Prompt for AI Agents
In cortex/cli.py around lines 172 to 189 the except block swallows all errors
from dependency resolution; change it to catch Exception as e and log the
failure with the exception details at debug level (e.g.,
logging.getLogger(__name__).debug("Dependency resolution failed for %s: %s",
target_package, e, exc_info=True) or use the existing class logger if available)
then preserve the existing non-fatal behavior (do not re-raise) so users and
debuggers can see why resolution failed.
| if value.lower() in ('true', 'yes', 'on', '1'): | ||
| return True | ||
| if value.lower() in ('false', 'no', 'off', '0'): | ||
| return False |
There was a problem hiding this comment.
Parsing '0' and '1' as booleans may cause unexpected behavior.
The string '1' is parsed as True and '0' as False, which could be problematic when users intend to set an integer value. Consider requiring explicit boolean keywords only.
- if value.lower() in ('true', 'yes', 'on', '1'):
+ if value.lower() in ('true', 'yes', 'on'):
return True
- if value.lower() in ('false', 'no', 'off', '0'):
+ if value.lower() in ('false', 'no', 'off'):
return FalseThis ensures cortex config set some.int.value 1 sets an integer, not a boolean.
📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| if value.lower() in ('true', 'yes', 'on', '1'): | |
| return True | |
| if value.lower() in ('false', 'no', 'off', '0'): | |
| return False | |
| if value.lower() in ('true', 'yes', 'on'): | |
| return True | |
| if value.lower() in ('false', 'no', 'off'): | |
| return False |
🤖 Prompt for AI Agents
In cortex/cli.py around lines 494 to 497, the boolean parsing currently treats
'1' and '0' as True/False which can misinterpret numeric inputs; change the
checks to only accept explicit boolean words (e.g., 'true', 'yes', 'on' => True
and 'false', 'no', 'off' => False) and remove '1' and '0' from those tuples so
numeric strings fall through to integer/other parsing; update or add unit tests
to assert that "1" and "0" are not converted to booleans and that explicit
boolean words still parse correctly.
| except Exception as e: | ||
| raise IOError(f"Failed to create backup: {str(e)}") |
There was a problem hiding this comment.
🛠️ Refactor suggestion | 🟠 Major
Use exception chaining for better debugging context.
When re-raising exceptions, use raise ... from e to preserve the original traceback.
except Exception as e:
- raise IOError(f"Failed to create backup: {str(e)}")
+ raise IOError(f"Failed to create backup: {e}") from eApply the same pattern to lines 223, 225, 256, and 354.
🧰 Tools
🪛 Ruff (0.14.5)
197-197: Do not catch blind exception: Exception
(BLE001)
198-198: Within an except clause, raise exceptions with raise ... from err or raise ... from None to distinguish them from errors in exception handling
(B904)
198-198: Avoid specifying long messages outside the exception class
(TRY003)
198-198: Use explicit conversion flag
Replace with conversion flag
(RUF010)
🤖 Prompt for AI Agents
In cortex/user_preferences.py around lines 197-198 (and also apply to lines 223,
225, 256, and 354), the code re-raises new exceptions without chaining the
original exception; update each raise to use "raise ... from e" (for example,
raise IOError(f"...: {e}") from e) so the original traceback is preserved and
include the original error message in the new exception text for clearer
context.
2 participants
Summary
structured the project and add instruction to
contributing.mdanddeveloper-guide.md.also changed
cli.pyto adjust to new import path.Type of Change
Checklist
Testing
needed to add Path of each file referred in test scripts, done with
import osand added path of files related to test scripts mentioned. (import path update)run
run_all_test.pyto test...all test passed.
Summary by CodeRabbit
Release Notes
New Features
Bug Fixes
Documentation
Chores
✏️ Tip: You can customize this high-level summary in your review settings.