Interactive Embedding Explorer (Supplementary Software 1)

Self-contained, browser-based interactive visualization tool for MetaboFM's learned embeddings. No installation, server, or account required — download and open the HTML file directly in any modern browser.

Four embedding spaces: sample-level (Stage 2), channel-level (Stage 1), channel-level (Stage 2, cross-channel-refined), and molecule centroids (searchable by name, colored by drug-similarity score matching Fig. 6d). Click any point to retrieve its top-K nearest neighbors by cosine similarity.

Generated by export_explorer_data.py in the main repository.