chameleon 3.0.1

Whole-plugin real-world QA campaign: 8 parallel testers against real repos
(no mocks/unit-only) surfaced 6 P1 + 4 P2 issues, each reproduced independently
before fixing and re-verified by an adversarial pass.

Fixed

• Secret-deny concat-fold missed many split forms (P1). A hardcoded
  credential split so the raw bytes never held the literal token reached disk
  under enforce mode with no deny. The fold is rebuilt around one unified string
  atom (all quote styles plus r/b/f/u prefixes), now covering: backtick
  and cross-quote and triple/single-mix + concat, implicit adjacency
  ("AKIA" "REST" — valid Python/Ruby concatenation), [...].join('') (JS) and
  ''.join([...]) (Python order), Ruby %w[...].join, and an empty template
  interpolation (`AKIA${''}REST`), and hex/unicode-escaped tokens
  ("\x41\x4b..." + "…"). The atom uses an atomic group + possessive
  quantifiers so pairing atoms around a + can't backtrack (a naive version
  hung multi-second on a string-dense file); a hard pass cap bounds the loop.
  Verified against a false-positive battery (real interpolation, dict/list
  literals, non-empty .join separators, two-arg calls) so legit code never
  denies. Documented residuals a lint-time regex can't reach (no taint analysis
  or runtime eval): variable-then-join, a lone fully-hex-escaped literal, and
  glob-into-directory. _fold_string_concat in lint_engine.py.
• Secret-deny blind to a credential padded into the middle of an over-cap
  write (P1). The over-cap head+tail scan blanked the middle third, so a secret
  padded to the center shipped. Over-cap writes are now scanned in full up to 8×
  the cap. _deny_scan_content in hook_helper.py.
• mv/cp/ln/install laundered a blocked secret past the Stop backstop
  (P1). A secret file blocked at Stop could be relocated to a new path that
  nothing armed, ending the turn cleanly with the credential on disk. The Stop
  backstop now arms the destination of mv/cp/git mv/ln/install, found
  at any command position: inside a subshell ((mv a b)), behind a redirect
  (mv a b >/dev/null 2>&1, which previously hid the destination), after a
  command modifier (env/sudo/time/… mv), in a command substitution
  (x=$(mv a b)), or with a GNU -t DIR target. npm install, grep mv, and
  mv inside a string stay unmatched. _extract_bash_write_targets in
  hook_helper.py.
• Committed .chameleon/ broke worktree trust inheritance (P1). Because
  /chameleon-init commits .chameleon/, git worktree add checked it into
  every new worktree, defeating the trust redirect — a fresh worktree (e.g. for
  /chameleon-deep-work) ran untrusted with guardrails silently off, for both
  local-only and origin-backed repos. Trust now bridges a linked worktree to its
  main root via the .git pointer, fail-closed on profile-content divergence so
  a poisoned feature-branch profile still reads untrusted. _resolve_main_key in
  profile/trust.py.
• refresh silently downgraded a newer-schema profile (P1, data loss). A
  profile written by a newer engine was re-derived down to the current schema,
  destroying a teammate's committed work — and session-start auto-refresh did it
  unprompted. refresh_repo now refuses a too-new schema_version (both force
  and non-force) and preserves it. _refresh_repo_locked in tools.py.
• Comprehension tools went blind on an origin-less monorepo (P1). Reusing the
  coordinator repo_id for a workspace file (the documented "detect_repo once,
  reuse the id" pattern) returned a doc-invisible repo-arg-mismatch negative,
  because an origin-less monorepo derives a distinct repo_id per workspace. The
  repo arg is now advisory: get_archetype/get_callers/get_callees/
  get_blast_radius/query_symbol_importers/get_duplication_candidates answer
  for the file's own repo. Trust stays gated on the file's repo_id (no boundary
  crossing).
• Coordinator monorepo got a spurious duplicate root profile (P2). A declared
  coordinator (pnpm-workspace.yaml / workspaces) whose root carries no source
  wrote a lossy root profile duplicating one workspace, contradicting the
  documented success_workspaces_only contract and making root describe_codebase
  show only part of the repo. It now drops the redundant root profile and reports
  success_workspaces_only; a manifest-less apps/* repo keeps its root union
  profile. orchestrator.py.
• refresh noop was fooled by a content-preserving rename (P2). A git mv of
  a canonical-witness file kept the file count and mtimes unchanged, so refresh
  noop'd while the whole archetype's canonical excerpt silently went missing.
  Refresh now re-derives when a canonical witness has vanished. tools.py.
• get_pattern_context disclosed profile data from an untrusted profile (P2).
  It redacted only the canonical content, still leaking the archetype
  classification, witness path, and content hash from an attacker-plantable
  committed profile. It now nulls those under untrusted, matching get_archetype.
  tools.py.
• get_status reported enforce-healthy over an unloadable profile (P2). A
  corrupt/truncated core artifact (archetypes/canonicals/rules.json) made every
  read tool degrade honestly while /chameleon-status still showed mode=enforce
  — now it reports the profile corrupt. Legitimately-partial profiles still render
  normally. _profile_unrenderable_status in tools.py.
• Phantom-symbol lint false-flagged a same-turn export rename (P2). The check
  trusted the bootstrap-time exports index with no live fallback, so renaming an
  export and updating its importer in one turn produced a false "not exported."
  It now skips a target module edited since the index was built (TS and Python),
  fail-open. phantom_imports.py / symbol_index.py.
• /chameleon-init and /chameleon-refresh swallowed bootstrap diagnostic
  warnings (P2). The envelope carries sparse_cluster_warnings and siblings
  naming real code that got no archetype (e.g. two NestJS *.guard.ts files
  below the cluster floor), but the skills never surfaced them, so a role
  silently had no guidance. Both skills now report the non-empty warning
  categories tersely and point the user at /chameleon-teach.
• teach_competing_import false-warned on a baseUrl-relative import (P3).
  A first-party module imported by a bare path under tsconfig baseUrl
  (lib/api-client) was read as the npm package lib and warned "not in
  package.json." It now resolves the specifier against baseUrl first and skips
  the warning when it's a real local module; a genuinely absent package still
  warns. tools.py.
• inheritance-convention-violation false-flagged legitimate inheritance in
  Ruby and Python (P2). A Rails controller extending ApplicationController
  (idiomatic top-level, when the archetype's dominant base is some namespace
  *::BaseController) and a Python class extending a same-file peer or another
  base from the dominant's own framework module (serializers.RelatedField
  alongside serializers.ModelSerializer) were flagged as wrong-base. Now a
  framework root base, a same-file peer (local composition), and a same-module
  base family are all exempt; a genuinely unrelated base still flags.
  lint_engine.py. (Also corrected docs/architecture.md: the rule runs on
  Python too, not Ruby only.)