chameleon 4.0.1

Fixes from a full-plugin, real-invocation QA campaign (every hook, MCP tool,
skill flow, and support surface driven from scratch across TypeScript, Ruby,
and Python repos; ~350 test cells).

Fixed

• The cached index.db connection is now keyed by its resolved path, so a
  CHAMELEON_PLUGIN_DATA change mid-process (test isolation, A/B harnesses)
  can no longer write rows into — or read rows from — a data dir the handle
  was bound to earlier. The read-only path also closes the stale handle on a
  path switch instead of leaking one connection per switch. Historical
  pollution this caused (262 pytest tmp-repo rows in the real registry) has a
  suite-level guard now: unit tests default to an isolated data dir.
• .pause_until is HMAC-signed like the session-disable marker: line 1 stays
  the bare ISO expiry for display readers, a sig= line follows, and the
  suppression gate rejects a marker planted directly on disk (bare timestamp
  or wrong signature). Previously any process that could write to the data dir
  could silently suppress every advisory with one plaintext file. A pause
  started under a pre-4.0.1 version stops suppressing after upgrade (its
  marker is unsigned); re-run /chameleon-pause-15m if needed.
• refresh_repo no longer crashes on a binary-corrupted principles.md or
  profile.summary.md (undecodable bytes now count as "incomplete, re-derive"
  instead of escaping as a UnicodeDecodeError), and a noop refresh now
  self-heals a binary-corrupted conventions.md mirror instead of silently
  skipping the rewrite forever — the exact repair paths a corrupted-profile
  user is told to run. The partial-refresh path gets the same treatment: a
  binary-corrupted idioms.md now falls back to the full bootstrap (which
  carries the damaged file forward byte-identical, with a warning) instead of
  crashing — and never substitutes an empty string that the transaction would
  write back over the user-authored file.
• Both marker signature checks compare digests as bytes: a planted marker
  whose sig= line contains a non-ASCII character used to make
  hmac.compare_digest raise TypeError out of the reject path instead of
  rejecting. The session-disable marker's file read now also tolerates raw
  invalid-UTF-8 bytes (rejecting the marker rather than letting a
  UnicodeDecodeError escape is_chameleon_suppressed and skip a root's
  turn-end gates via the hook's fail-open).
• The statusline verifies the pause marker's HMAC signature before rendering
  "paused", so a planted or forged .pause_until the enforcement gate rejects
  no longer shows as paused in the status line.
• A fresh trusted profile's first refresh no longer emits the false
  "idioms.md exists but contains no parseable idiom blocks... may be damaged"
  warning: the idiom store's bare empty view (written by trust/teach
  migration) is now recognized as a known-empty form alongside the legacy
  placeholder template.
• Duplication candidates no longer offer test-file functions as reuse targets
  for production code (they crowded real leads out of the per-function
  candidate cap); a byte/param-identical clone still surfaces, and a test
  file under review keeps its test-helper candidates.

Changed

• get_contract_breaks documents its second finding shape
  (kind: "removed_export_still_imported", both positional fields null) in
  the tool docstring and MCP schema, and the pr-review skill routes it — and
  lint_file's cross-file-importers / removed-export-breaks-importers
  rules — with explicit one-citation dedupe against the cross-file existence
  pass, so the same removed-export break is never reported three times.
• merge_profiles documents that its repo argument is accepted for MCP
  schema uniformity but unused (the merge driver invokes it per-file with no
  repo context, no trust gate; the write is Write-equivalent on
  caller-controlled paths).